Laura Gauthier 5a10758e2e Annotation changes for M2: ... Build a ReferenceContext in ActiveRegionWalkers to pass in to annotation engine so we can call the TandemRepeatAnnotator from M2 Make TandemRepeatAnnotator default annotation for M2. Setup (but don't use yet) HC-style contamination downsampling. New HC integration test with TandemRepeatAnnotator		2015-03-27 18:25:23 -04:00
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gatk-package-distribution	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
gatk-queue-extensions-distribution	Regression: The new 'includeUnmapped' PartitionBy annotation was incorrectly set for HC	2015-03-13 00:24:57 -04:00
gatk-queue-package-distribution	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
gatk-tools-protected	Annotation changes for M2:	2015-03-27 18:25:23 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.4 development	2014-10-23 22:31:44 -04:00