gatk3的最后一个经典版本3.8

Mark DePristo 59df329776 Fast path for biallelic variants in IndependentAllelesDiploidExactAFCalc ... -- If the VariantContext is a bi-allelic variant already, don't split up the VC (it doesn't do anything) and then combine it back together. This saves us a lot of work on average -- Be more protective of calls to AFCalc with a VariantContext that might only have ref allele, throwing an exception		2013-02-06 10:34:09 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Fast path for biallelic variants in IndependentAllelesDiploidExactAFCalc	2013-02-06 10:34:09 -05:00
public	Merge pull request #13 from broadinstitute/dr_variant_migration_GSA-692	2013-02-06 07:22:30 -08:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00