hanna 54660a8c25 Fix requested by Lee Lichtenstein: first check to see whether it's time for ... a progress message, then aggregate metrics. Makes the overhead of printProgress in RealignerTargetCreator go from >20% to ~3%. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5663 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-20 03:22:48 +00:00
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net/sf	Did some refactoring which broke some unit tests, and then failed to run	2011-04-08 03:31:52 +00:00
org/broadinstitute/sting	Fix requested by Lee Lichtenstein: first check to see whether it's time for	2011-04-20 03:22:48 +00:00