kshakir 6ec3dd0f8c Updated GridEngineJobRunner to return status RUNNING instead of PENDING when a job has been sent to GridEngine, even if it hasn't started. ... Added GridEngine to pipeline tests. Removed passing -jobProject since GridEngine projects must be predefined. Writing the HybridSelectionPipelineTest yaml into the temp directory. Disabled job priority as it needs to be refactored for use by GridEngine and LSF. Fixed WholeGenomePipeline variantmergeoption rename to filteredRecordsMergeType. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5872 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-25 17:16:44 +00:00
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extensions/gatk	Contracts for GenomeLocParser and GenomeLoc are now fully implemented.	2011-05-21 02:01:59 +00:00
pipeline	Updated GridEngineJobRunner to return status RUNNING instead of PENDING when a job has been sent to GridEngine, even if it hasn't started.	2011-05-25 17:16:44 +00:00
util	Added a utility method to retrieve the contig lengths for WG chunking.	2011-04-20 19:22:21 +00:00