Eric Banks 593c8065d9 Fix docs for BadMateFilter		2012-10-12 08:35:45 -04:00
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alignment	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
commandline	Cleanup RefMetaDataTracker before refactoring ReadMetaDataTracker	2012-08-30 10:13:06 -04:00
gatk	Fix docs for BadMateFilter	2012-10-12 08:35:45 -04:00
jna	Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc.	2012-01-23 16:17:04 -05:00
queue	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
utils	Turning on allele trimming for the haplotype caller.	2012-10-10 10:47:26 -04:00