gatk3的最后一个经典版本3.8

Mark DePristo 592f90aaef ActivityProfile now cuts intelligently at the best local minimum when in a larger than max size active region ... -- This new algorithm is essential to properly handle activity profiles that have many large active regions generated from lots of dense variant events. The new algorithm passes unit tests and passes visualize visual inspection of both running on 1000G and NA12878 -- Misc. commenting of the code -- Updated ActiveRegionExtension to include a min active region size -- Renamed ActiveRegionExtension to ActiveRegionTraversalParameters, as it carries more than just the traversal extension now		2013-01-24 13:48:00 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	ActivityProfile now cuts intelligently at the best local minimum when in a larger than max size active region	2013-01-24 13:48:00 -05:00
public	ActivityProfile now cuts intelligently at the best local minimum when in a larger than max size active region	2013-01-24 13:48:00 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Added atlassian intellij plugin file to .gitignore	2013-01-23 20:55:28 -07:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00