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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Ryan Poplin ff8ba03249 Updating BQSR integration test md5s to reflect the updates to the hierarchicalBayesianQualityEstimate function 2013-01-30 13:30:18 -05:00
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annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Updating BQSR integration test md5s to reflect the updates to the hierarchicalBayesianQualityEstimate function 2013-01-30 13:30:18 -05:00
compression/reducereads Refactoring the SimpleGenomeLoc into the now public utility UnvalidatingGenomeLoc and the RR-specific FinishedGenomeLoc. 2013-01-30 10:45:29 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00
haplotypecaller Cleanup, document, and unit test ActiveRegion 2013-01-30 09:47:12 -05:00
indels Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00