Mark DePristo 63e68a725f Expanded unit tests for AlignmentUtils ... -- Added JIRA entries for the remaining capabilities to be fixed up and unit tested		2013-01-31 17:26:35 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	Expanded unit tests for AlignmentUtils	2013-01-31 17:26:35 -05:00
keys	…
packages	Rev picard, sam-jdk, and tribble	2013-01-31 16:32:45 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Making metrics a required parameter in MarkDuplicates	2013-01-25 17:49:49 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00