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datasources
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New ActiveRegionShardBalancer allows efficient NanoScheduling
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2013-05-13 11:09:02 -04:00 |
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downsampling
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Setting the reduce reads count tag was all wrong in a previous commit; fixing.
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2013-04-30 13:45:42 -04:00 |
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executive
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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Added check in the MalformedReadFilter for reads without stored bases (i.e. that use '*').
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2013-03-14 17:17:26 -04:00 |
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iterators
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Refactor LIBS into utils.locusiterator before refactoring
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2013-01-11 15:17:16 -05:00 |
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refdata
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Detect stuck lock-acquisition calls, and disable file locking for tests
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2013-04-24 22:49:02 -04:00 |
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report
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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samples
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Trivial update to ceutrio.ped file to make it really the CEU trio sample names
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2013-05-14 17:08:13 -04:00 |
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traversals
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Count Reads should use a Long instead of an Integer for counts to prevent overflows. Added unit test.
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2013-05-21 15:23:51 -04:00 |
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walkers
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Count Reads should use a Long instead of an Integer for counts to prevent overflows. Added unit test.
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2013-05-21 15:23:51 -04:00 |
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CommandLineGATKUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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EngineFeaturesIntegrationTest.java
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Further tweaking of test timeouts
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2013-03-15 14:49:21 -04:00 |
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GenomeAnalysisEngineUnitTest.java
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Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.
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2013-03-06 12:38:59 -05:00 |
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MaxRuntimeIntegrationTest.java
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Subshard timeouts in the GATK
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2013-05-15 07:00:39 -04:00 |
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WalkerManagerUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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