rpoplin 58a31bab6a Variant optimizer now outputs VCF files via ApplyVariantClustersWalker. Documentation to be added to the wiki. It is ready to be used by other people but only with great caution. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3028 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-17 20:41:42 +00:00
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analyzeConcordance	Using bitmap() instead of png() since the former doesn't rely on X11.	2010-02-23 05:31:51 +00:00
PlotDepthOfCoverage.R	Eliminate the shell items, as FH will be calling this with /broad/tools/apps/R-2.72/bin/Rscript	2010-03-09 20:15:21 +00:00
generateBySamplePlot.R	R script for graphing depth of coverage by sample name, and generating a loess curve for each sample's data.	2009-12-10 21:58:01 +00:00
plot_Annotations_BinnedTruthMetrics.R	Making the dotted quartile lines more clear.	2010-02-03 22:23:09 +00:00
plot_OptimizationCurve.R	Variant optimizer now outputs VCF files via ApplyVariantClustersWalker. Documentation to be added to the wiki. It is ready to be used by other people but only with great caution.	2010-03-17 20:41:42 +00:00
plot_residualError_OtherCovariate.R	Update to AnalyzeCovariates to make the histogram of PairedReadOrder look a little nicer	2010-01-13 20:26:31 +00:00
plot_residualError_QualityScoreCovariate.R	Added an option to AnalyzeCovariates to set the max value of the histograms to make them easier to directly compare.	2010-01-31 23:13:57 +00:00
plotting_library.R	Eliminate the rescale factor -- heatmap automatically normalizes the data	2010-02-16 16:34:33 +00:00
whole_exome_bait_selection.R	R script for selecting a variety of baits (using %GC content and normalized coverage) for Nanostring assessment from those used in the Agilent whole exome hybrid selection design.	2009-09-22 18:10:14 +00:00