ebanks 202231141c -Push the --use_original_qualities argument into the engine. ... -Check that base and qual strings are the same lengths -Fix one more bug in the clipper. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3006 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-16 02:06:11 +00:00
..
alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	-Integration tests for walkers that use original quals.	2010-03-15 18:46:31 +00:00
oneoffprojects/walkers	Fixing broken integration tests	2010-03-14 23:18:49 +00:00
playground/gatk/walkers	-Push the --use_original_qualities argument into the engine.	2010-03-16 02:06:11 +00:00
utils	Unit tests for -XL arguments; expt. annotation calculating the GC content within 100 bp of the current SNP	2010-03-14 21:08:14 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	another test-with-multiple outputs fix	2010-03-04 22:46:15 +00:00