ebanks 202231141c -Push the --use_original_qualities argument into the engine. ... -Check that base and qual strings are the same lengths -Fix one more bug in the clipper. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3006 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-16 02:06:11 +00:00
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broadinstitute/sting	-Push the --use_original_qualities argument into the engine.	2010-03-16 02:06:11 +00:00