chartl 54d93f63d2 Hacky fix for LSF confusion -- submitted jobs check to see if their directory exists, despite depending on the job which creates said directory. Filter strings now have escaped quotes. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3903 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-29 21:35:50 +00:00
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gatk	Added a temporary gatkLoggingLevel field to the soon to be obsolete GatkFunction while finishing up the delayed generic gatk walker utility.	2010-07-11 03:27:32 +00:00
scattergather	Hacky fix for LSF confusion -- submitted jobs check to see if their directory exists, despite depending on the job which creates said directory. Filter strings now have escaped quotes.	2010-07-29 21:35:50 +00:00
CommandLineFunction.scala	Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor.	2010-06-30 18:55:57 +00:00
DispatchFunction.scala	Better DOT support and updated recalibration pipeline	2010-07-16 20:54:51 +00:00
DispatchWaitFunction.scala	Added "-bsubWait" where Queue waits for all the jobs to exit before exiting.	2010-06-28 19:52:17 +00:00
InputOutputFunction.scala	Using picard for bam merging.	2010-06-28 17:59:09 +00:00
IntervalFunction.scala	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
MappingFunction.scala	Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.	2010-06-25 20:51:13 +00:00
QFunction.scala	Better DOT support and updated recalibration pipeline	2010-07-16 20:54:51 +00:00