gatk3的最后一个经典版本3.8

Chris Hartl 5780926254 Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable		2012-12-12 15:42:40 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-12 14:53:02 -05:00
public	Fix docs for ReadBackedPhasing	2012-12-12 20:28:04 +00:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00