chartl 576ae30df1 A version of the full calling pipeline queue script that fully compiles without String/File/NamedFile type exceptions (e.g. expected String but got NamedFile/Expected NamedFile but got File). Pipeline itself is under testing with 5 bam files. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4154 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-28 22:51:11 +00:00
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depristo	1kg script now works	2010-08-10 12:01:18 +00:00
examples	Allowing the Queue to run the GATK via -cp instead of only from -jar.	2010-08-27 16:25:59 +00:00
kshakir	Updated firehose clean bam pipeline to pull firehose info and push back firehose clean bam.	2010-08-23 20:38:42 +00:00
rpoplin	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
fullCallingPipeline.q	A version of the full calling pipeline queue script that fully compiles without String/File/NamedFile type exceptions (e.g. expected String but got NamedFile/Expected NamedFile but got File). Pipeline itself is under testing with 5 bam files.	2010-08-28 22:51:11 +00:00
recalibrate.scala	More updates to the CleanBamFile pipeline.	2010-08-17 14:59:42 +00:00