Guillermo del Angel 13831106d5 Fix GSA-535: storing likelihoods in allele map was busted when running HaplotypeCaller, only the last likelihood of a haplotype was being stored, as opposed to the max likelihood of all haplotypes mapping to an allele		2012-09-11 11:01:26 -04:00
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bqsr	Updating BQSR tests due to my change to reset BQSR calibration data	2012-08-31 19:51:09 -04:00
compression/reducereads	Fixed divide by zero bug when downsampler goes over regions where reads are all filtered out. Added Guillermo's bug report as an integration test	2012-08-09 13:02:11 -04:00
genotyper	Update MD5s with new FS score	2012-08-28 08:06:47 -04:00
haplotypecaller	Fix GSA-535: storing likelihoods in allele map was busted when running HaplotypeCaller, only the last likelihood of a haplotype was being stored, as opposed to the max likelihood of all haplotypes mapping to an allele	2012-09-11 11:01:26 -04:00