Eric Banks 5743694196 Merged bug fix from Stable into Unstable		2012-07-30 11:35:28 -04:00
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src/org/broadinstitute/sting	Merged bug fix from Stable into Unstable	2012-07-30 11:35:28 -04:00
test/org/broadinstitute/sting/gatk/walkers	Final checkpoint: all tests pass. Note that there were bugs in the PoolGenotypeLikelihoodsUnitTest that needed fixing and eventually led to my needing to disable one of the tests (with a note for Guillermo to look into it). Also note that while I have moved over the GATK to use the new non-null representation of Alleles, I didn't remove all of the now-superfluous code throughout to do padding checking on merges; we'll need to do this on a subsequent push.	2012-07-29 01:07:59 -04:00