hanna 56f6847456 Changed interface from contig,pos,length to more common contig,start,stop interface. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@441 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-16 00:04:41 +00:00
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gatk	Fixed potential bug with next() operation returning empty contexts when a read contains a large deletion. We can now use the look ahead safely...	2009-04-15 21:38:28 +00:00
playground	* minor formatting changes	2009-04-15 15:11:05 +00:00
utils	Changed interface from contig,pos,length to more common contig,start,stop interface.	2009-04-16 00:04:41 +00:00
StingException.java	We need a base exception so we can differentiate between exceptions we've generated and those external to our code. All our exceptions should extend this exception. I'll migrate the ones I can find later on.	2009-04-07 00:13:45 +00:00