Eric Banks 6253ba164e Using --keepOriginalAC in SelectVariants was causing it to emit bad VCFs ... * This occurred when one or more alleles were lost from the record after selection * Discussed here: http://gatkforums.broadinstitute.org/discussion/comment/4718#Comment_4718 * Added some integration tests for --keepOriginalAC (there were none before)		2013-04-05 00:53:28 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Using --keepOriginalAC in SelectVariants was causing it to emit bad VCFs	2013-04-05 00:53:28 -04:00
test	Remove auto-creation of fai/dict files for fasta references	2013-04-02 18:34:08 -04:00