Eric Banks 6253ba164e Using --keepOriginalAC in SelectVariants was causing it to emit bad VCFs ... * This occurred when one or more alleles were lost from the record after selection * Discussed here: http://gatkforums.broadinstitute.org/discussion/comment/4718#Comment_4718 * Added some integration tests for --keepOriginalAC (there were none before)		2013-04-05 00:53:28 -04:00
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java	Using --keepOriginalAC in SelectVariants was causing it to emit bad VCFs	2013-04-05 00:53:28 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00