gatk3的最后一个经典版本3.8

Mark DePristo 569be953b9 Bugfix for VariantEval ... -- We weren't properly handling the case where a site had both a SNP and indel in both eval and comp. These would naturally pair off as SNP x SNP and INDEL x INDEL in eval, but we'd still invoke update2 with (null, SNP) and (null, INDEL) resulting most conspicously as incorrect false negatives in the validation report. -- Updating misc. integrationtests, as the counting of comps (in particular for dbSNP) was inflated because of this effect.		2012-03-06 16:56:59 -05:00
public	Bugfix for VariantEval	2012-03-06 16:56:59 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00