1592 lines
300 KiB
Plaintext
1592 lines
300 KiB
Plaintext
##fileformat=VCFv4.0
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##FILTER=<ID=ABFilter,Description="AB 0.75 && DP 40">
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##FILTER=<ID=DPFilter,Description="DP 120 || SB -0.10">
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##FILTER=<ID=FDRtranche0.10to1.00,Description="FDR tranche level at qual 1.13">
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##FILTER=<ID=FDRtranche1.00to2.00,Description="FDR tranche level at qual 0.72">
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##FILTER=<ID=FDRtranche2.00to10.00,Description="FDR tranche level at qual 1.13">
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##FILTER=<ID=FDRtranche2.00to10.00+,Description="FDR tranche level at qual gt 1.13">
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##FILTER=<ID=HARD_TO_VALIDATE,Description="MQ0 = 4 && ((MQ0 / (1.0 * DP)) 0.1)">
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##FILTER=<ID=Indel,Description="Overlaps a user-input mask">
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##FILTER=<ID=LowQual,Description="Low quality">
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##FILTER=<ID=SnpCluster,Description="SNPs found in clusters">
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##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth (only filtered reads used for calling)">
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##FORMAT=<ID=GL,Number=3,Type=Float,Description="Log-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic">
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##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
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##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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##INFO=<ID=AB,Number=1,Type=Float,Description="Allele Balance for hets (ref/(ref+alt))">
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##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
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##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
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##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
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##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
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##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
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##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
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##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with two (and only two) segregating haplotypes">
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##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
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##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
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##INFO=<ID=OQ,Number=1,Type=Float,Description="The original variant quality score">
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##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
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##INFO=<ID=SB,Number=1,Type=Float,Description="Strand Bias">
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##SelectVariants="input_file=[] interval_merging=ALL read_buffer_size=null unsafe=null sample_metadata=[] read_filter=[] rodBind=[/humgen/gsa-hpprojects/dev/depristo/oneOffProjects/1000GenomesProcessingPaper/wgs.v8/HiSeq.WGS.cleaned.ug.snpfiltered.indelfiltered.optimized.cut.vcf] read_group_black_list=null log_to_file=null logging_level=INFO intervals=[chr20:332341-1332503] BTI_merge_rule=UNION debug_mode=false downsample_to_fraction=null DBSNP=null num_threads=1 quiet_output_mode=false analysis_type=SelectVariants rodToIntervalTrackName=null help=false validation_strictness=SILENT downsample_to_coverage=null excludeIntervals=null reference_sequence=/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta useOriginalQualities=false phone_home=STANDARD downsampling_type=null excludeNonVariants=false select_expressions=[] out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sample=null excludeFiltered=false"
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##UG_assume_single_sample_reads=null
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##UG_bam_file_used=NA12878.HiSeq.WGS.bwa.cleaned.recal.bam
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##UG_base_model=EMPIRICAL
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##UG_cap_base_quality_by_mapping_quality=false
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##UG_genotype=false
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##UG_genotype_model=JOINT_ESTIMATE
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##UG_heterozygosity=7.8E-4
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##UG_max_deletion_fraction=0.05
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##UG_max_mismatches_in_40bp_window=3
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##UG_min_base_quality_score=20
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##UG_min_mapping_quality_score=20
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##UG_noSLOD=false
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##UG_output_all_callable_bases=false
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##UG_platform=null
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##UG_standard_min_confidence_threshold_for_calling=30.0
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##UG_standard_min_confidence_threshold_for_emitting=10.0
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##UG_trigger_min_confidence_threshold_for_calling=30.0
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##UG_trigger_min_confidence_threshold_for_emitting=30.0
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##UG_use_reads_with_bad_mates=false
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##reference=Homo_sapiens_assembly18.fasta
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##source=SelectVariants
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##source=UnifiedGenotyper
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878
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chr20 332341 rs6076509 A G 470.60 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=1;HaplotypeScore=0.98;MQ=59.11;MQ0=0;OQ=627.69;QD=12.07;SB=-145.57 GT:DP:GL:GQ 0/1:46:-79.92,-13.87,-84.22:99
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chr20 332503 rs6133033 C G 726.23 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=0.95;MQ=60.00;MQ0=0;OQ=894.70;QD=14.67;SB=-472.75 GT:DP:GL:GQ 0/1:60:-110.83,-18.08,-149.73:99
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chr20 332644 rs6051744 C T 14.38 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=6.50;MQ=58.92;MQ0=1;OQ=3426.34;QD=38.94;SB=-1094.99 GT:DP:GL:GQ 1/1:85:-341.63,-25.61,-0.03:99
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chr20 332898 rs6084337 A G 746.95 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.30;MQ0=0;OQ=793.92;QD=13.23;SB=-388.61 GT:DP:GL:GQ 0/1:57:-99.85,-17.17,-120.35:99
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chr20 333052 rs4815580 A G 671.27 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=2739.53;QD=32.61;SB=-1012.30 GT:DP:GL:GQ 1/1:83:-277.60,-25.02,-0.06:99
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chr20 333240 rs4815581 A G 22.41 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=2;HaplotypeScore=5.00;MQ=58.94;MQ0=0;OQ=1732.43;QD=29.36;SB=-771.96 GT:DP:GL:GQ 1/1:55:-176.88,-16.59,-0.05:99
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chr20 333864 rs6037557 C T 630.96 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=70.34;MQ0=0;OQ=2615.95;QD=38.47;SB=-1213.38 GT:DP:GL:GQ 1/1:66:-265.20,-19.88,-0.02:99
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chr20 334122 rs6037558 C T 537.74 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=59.42;MQ0=0;OQ=1319.92;QD=18.33;SB=-431.77 GT:DP:GL:GQ 0/1:70:-156.36,-21.08,-117.16:99
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chr20 334464 rs6115856 A G 638.83 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.30;MQ0=0;OQ=832.15;QD=13.87;SB=-352.07 GT:DP:GL:GQ 0/1:60:-104.58,-18.08,-115.41:99
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chr20 335727 rs6076510 A G 784.34 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=103.36;MQ0=0;OQ=1018.69;QD=13.77;SB=-375.26 GT:DP:GL:GQ 0/1:70:-126.24,-21.08,-139.81:99
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chr20 335757 rs6084349 A G 656.95 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=71.87;MQ0=0;OQ=1017.55;QD=14.75;SB=-494.11 GT:DP:GL:GQ 0/1:65:-124.62,-19.58,-123.14:99
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chr20 335815 rs6133035 G A 511.44 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=1.85;MQ=60.00;MQ0=0;OQ=817.24;QD=16.02;SB=-340.32 GT:DP:GL:GQ 0/1:50:-100.07,-15.06,-87.47:99
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chr20 336516 rs34892054 C T 321.57 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=13;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=148.03;QD=9.87;SB=-10.00 GT:DP:GL:GQ 0/1:13:-22.01,-3.92,-21.38:99
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chr20 337456 rs3746792 C T 288.27 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=2;HaplotypeScore=0.83;MQ=58.73;MQ0=0;OQ=595.28;QD=12.40;SB=-123.54 GT:DP:GL:GQ 0/1:46:-76.67,-13.86,-89.06:99
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chr20 337881 rs4815585 C T 308.41 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=3.49;MQ=58.72;MQ0=0;OQ=1066.91;QD=20.92;SB=-466.98 GT:DP:GL:GQ 0/1:51:-125.34,-15.37,-67.13:99
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chr20 337984 rs4815586 C T 572.97 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=59.55;MQ0=0;OQ=1080.46;QD=21.19;SB=-510.15 GT:DP:GL:GQ 0/1:50:-126.39,-15.06,-66.55:99
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chr20 339170 rs7059 C T 743.98 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=1.16;MQ=60.00;MQ0=0;OQ=1377.97;QD=18.37;SB=-537.52 GT:DP:GL:GQ 0/1:75:-163.68,-22.60,-120.10:99
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chr20 341978 rs1358782 A G 330.19 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=3;HaplotypeScore=0.99;MQ=58.94;MQ0=1;OQ=1083.81;QD=16.67;SB=-560.04 GT:DP:GL:GQ 0/1:64:-130.95,-19.28,-111.18:99
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chr20 342585 rs6084373 A C 5.08 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=12.58;MQ=77.37;MQ0=0;OQ=687.78;QD=9.69;SB=-211.89 GT:DP:GL:GQ 0/1:61:-90.45,-18.39,-116.01:99
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chr20 342961 rs1129387 T C 658.02 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=58.40;MQ0=0;OQ=990.82;QD=13.57;SB=-520.94 GT:DP:GL:GQ 0/1:71:-123.77,-21.40,-130.74:99
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chr20 343822 rs6115898 C T 392.10 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=3.88;MQ=59.61;MQ0=0;OQ=948.24;QD=16.07;SB=-490.05 GT:DP:GL:GQ 0/1:56:-114.99,-16.88,-96.51:99
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chr20 344156 rs56367061 A G 653.35 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=1244.32;QD=15.95;SB=-460.61 GT:DP:GL:GQ 0/1:77:-150.91,-23.19,-148.85:99
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chr20 344978 rs8116493 G T 0.01 FDRtranche2.00to10.00+ AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.03;HRun=11;HaplotypeScore=20.80;MQ=53.39;MQ0=0;OQ=672.51;QD=11.40;SB=-310.19 GT:DP:GL:GQ 0/1:57:-87.71,-17.17,-104.07:99
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chr20 345928 rs6115906 C T 711.51 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1711.49;QD=34.93;SB=-877.64 GT:DP:GL:GQ 1/1:45:-174.75,-13.56,-0.02:99
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chr20 346278 rs11698154 G T 598.98 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=32;Dels=0.00;HRun=0;HaplotypeScore=1.97;MQ=60.00;MQ0=0;OQ=350.76;QD=9.48;SB=-162.16 GT:DP:GL:GQ 0/1:32:-48.01,-9.65,-59.44:99
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chr20 347074 . A G 454.61 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=45;Dels=0.00;HRun=0;HaplotypeScore=1.13;MQ=48.95;MQ0=0;OQ=591.86;QD=12.08;SB=-290.64 GT:DP:GL:GQ 0/1:45:-76.04,-13.57,-80.84:99
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chr20 347076 . A G 394.18 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=44;Dels=0.00;HRun=0;HaplotypeScore=2.28;MQ=48.70;MQ0=0;OQ=603.91;QD=12.58;SB=-299.65 GT:DP:GL:GQ 0/1:44:-76.94,-13.27,-74.87:99
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chr20 347761 rs959093 G A 623.85 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=59.41;MQ0=0;OQ=840.56;QD=13.34;SB=-303.82 GT:DP:GL:GQ 0/1:61:-105.72,-18.38,-117.06:99
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chr20 349205 rs4635591 A T 355.56 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=7;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=91.03;QD=11.38;SB=-10.00 GT:DP:GL:GQ 0/1:7:-14.50,-2.11,-9.22:71.09
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chr20 350053 rs6051899 G A 486.65 PASS AB=0.64;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=0;HaplotypeScore=1.82;MQ=59.46;MQ0=0;OQ=388.62;QD=9.04;SB=-147.66 GT:DP:GL:GQ 0/1:38:-53.61,-11.46,-74.00:99
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chr20 350710 rs2057251 A G 397.90 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=3;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=643.71;QD=13.70;SB=-316.29 GT:DP:GL:GQ 0/1:47:-81.81,-14.16,-97.30:99
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chr20 351192 rs11906374 G A 471.98 PASS AB=0.36;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=106.52;MQ0=0;OQ=1180.33;QD=21.46;SB=-580.45 GT:DP:GL:GQ 0/1:53:-137.29,-15.97,-61.22:99
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chr20 351211 . C T 20.34 PASS AB=0.28;AC=1;AF=0.50;AN=2;DP=35;Dels=0.00;HRun=0;HaplotypeScore=3.44;MQ=105.74;MQ0=0;OQ=905.46;QD=22.64;SB=-413.50 GT:DP:GL:GQ 0/1:35:-104.38,-10.55,-27.60:99
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chr20 351653 rs6051908 T G 715.79 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1109.16;QD=17.89;SB=-458.82 GT:DP:GL:GQ 0/1:61:-132.57,-18.37,-88.52:99
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chr20 352349 rs6107302 G A 393.23 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=3.94;MQ=59.71;MQ0=0;OQ=949.98;QD=14.84;SB=-452.24 GT:DP:GL:GQ 0/1:62:-119.37,-21.09,-116.35:99
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chr20 352407 rs6107303 T C 420.15 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=2;HaplotypeScore=1.26;MQ=57.92;MQ0=0;OQ=564.47;QD=12.54;SB=-266.37 GT:DP:GL:GQ 0/1:42:-72.39,-12.66,-80.41:99
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chr20 352916 rs3787563 T C 408.10 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=4.34;MQ=58.57;MQ0=0;OQ=693.24;QD=11.18;SB=-339.89 GT:DP:GL:GQ 0/1:59:-90.38,-17.77,-138.17:99
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chr20 357893 . G A 1.11 FDRtranche1.00to2.00 AB=0.59;AC=1;AF=0.50;AN=2;DP=34;Dels=0.00;HRun=0;HaplotypeScore=9.85;MQ=54.48;MQ0=0;OQ=419.41;QD=9.12;SB=-132.13 GT:DP:GL:GQ 0/1:34:-55.49,-10.26,-59.22:99
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chr20 359842 rs2295495 G A 595.20 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=60.00;MQ0=0;OQ=983.39;QD=18.55;SB=-336.45 GT:DP:GL:GQ 0/1:51:-116.99,-15.37,-72.36:99
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chr20 360298 . A C 0.26 FDRtranche2.00to10.00 AB=0.55;AC=1;AF=0.50;AN=2;DP=32;Dels=0.00;HRun=2;HaplotypeScore=8.14;MQ=57.77;MQ0=0;OQ=135.89;QD=3.24;SB=53.18 GT:DP:GL:GQ 0/1:32:-26.51,-9.64,-81.02:99
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chr20 362546 . T C 190.34 PASS AB=0.37;AC=1;AF=0.50;AN=2;DP=32;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.38;MQ0=0;OQ=503.87;QD=14.40;SB=-92.69 GT:DP:GL:GQ 0/1:32:-63.32,-9.65,-50.42:99
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chr20 362645 rs1810588 G T 0.47 FDRtranche2.00to10.00 AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=8;HaplotypeScore=4.13;MQ=58.76;MQ0=0;OQ=679.04;QD=11.32;SB=-145.47 GT:DP:GL:GQ 0/1:58:-88.67,-17.48,-106.90:99
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chr20 363205 rs6037639 A G 551.44 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=2.76;MQ=58.61;MQ0=0;OQ=952.35;QD=13.41;SB=-379.28 GT:DP:GL:GQ 0/1:68:-119.00,-20.48,-138.69:99
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chr20 364149 rs6695 A G 705.11 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.49;MQ0=0;OQ=1153.67;QD=12.82;SB=-522.59 GT:DP:GL:GQ 0/1:88:-145.17,-26.52,-176.18:99
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chr20 365612 rs6052005 T C 440.79 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=58.87;MQ0=0;OQ=797.83;QD=19.46;SB=-410.34 GT:DP:GL:GQ 0/1:40:-95.12,-12.05,-55.14:99
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chr20 366199 rs3746793 T A 749.13 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=931.02;QD=16.05;SB=-437.53 GT:DP:GL:GQ 0/1:58:-113.85,-17.47,-106.08:99
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chr20 367067 rs3746794 C T 477.21 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=3.95;MQ=58.55;MQ0=0;OQ=876.56;QD=13.70;SB=-441.38 GT:DP:GL:GQ 0/1:60:-109.02,-18.08,-113.40:99
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chr20 368105 . G A 386.52 PASS AB=0.43;AC=1;AF=0.50;AN=2;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=870.15;QD=18.51;SB=-456.46 GT:DP:GL:GQ 0/1:47:-104.47,-14.17,-64.84:99
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chr20 372198 rs6139186 G C 320.69 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=3;HaplotypeScore=3.56;MQ=59.18;MQ0=0;OQ=1400.42;QD=16.48;SB=-460.79 GT:DP:GL:GQ 0/1:82:-168.03,-24.71,-190.02:99
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chr20 372565 rs6116001 C T 224.66 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.86;MQ0=0;OQ=926.34;QD=16.25;SB=-290.76 GT:DP:GL:GQ 0/1:57:-113.10,-17.18,-94.61:99
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chr20 373097 rs6116005 G A 717 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=85;Dels=0.00;HRun=1;HaplotypeScore=0.93;MQ=58.55;MQ0=0;OQ=1448.00;QD=16.64;SB=-570.40 GT:DP:GL:GQ 0/1:85:-173.69,-25.61,-148.69:99
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chr20 373434 rs2273463 C T 406.48 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=2;HaplotypeScore=1.15;MQ=59.31;MQ0=0;OQ=1294.42;QD=19.32;SB=-577.58 GT:DP:GL:GQ 0/1:65:-152.30,-19.58,-103.06:99
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chr20 373606 rs2273465 C A 715.59 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.24;MQ0=0;OQ=984.28;QD=17.90;SB=-459.21 GT:DP:GL:GQ 0/1:54:-117.98,-16.27,-70.17:99
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chr20 374433 rs6037660 T C 648.13 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=90;Dels=0.00;HRun=1;HaplotypeScore=1.40;MQ=59.80;MQ0=0;OQ=1350.36;QD=14.84;SB=-630.50 GT:DP:GL:GQ 0/1:90:-165.43,-27.11,-182.79:99
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chr20 375070 rs6116017 C T 537.65 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.70;MQ0=0;OQ=1055.11;QD=18.19;SB=-372.87 GT:DP:GL:GQ 0/1:55:-125.37,-16.57,-79.66:99
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chr20 375173 rs6515823 T C 312.60 PASS AB=0.69;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.78;MQ=57.79;MQ0=0;OQ=303.97;QD=5.96;SB=-62.59 GT:DP:GL:GQ 0/1:50:-48.75,-15.07,-138.16:99
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chr20 376039 rs6116018 T C 429.88 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=1.62;MQ=59.59;MQ0=0;OQ=863.79;QD=15.42;SB=-154.71 GT:DP:GL:GQ 0/1:55:-106.23,-16.57,-91.81:99
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chr20 376767 rs6139203 A C 676.29 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.28;MQ0=0;OQ=787.24;QD=13.57;SB=-357.82 GT:DP:GL:GQ 0/1:56:-98.87,-16.86,-106.52:99
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chr20 376928 rs6037661 C T 625.04 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.79;MQ=59.17;MQ0=0;OQ=962.84;QD=17.19;SB=-339.33 GT:DP:GL:GQ 0/1:56:-116.44,-16.87,-98.37:99
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chr20 377196 rs6037663 C G 463.25 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=27;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=55.84;MQ0=0;OQ=314.82;QD=11.24;SB=-181.45 GT:DP:GL:GQ 0/1:27:-42.91,-8.14,-68.12:99
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chr20 377506 . G T 21.78 DPFilter;LowQual AB=0.75;AC=1;AF=0.50;AN=2;DP=26;Dels=0.00;HRun=20;HaplotypeScore=15.40;MQ=52.07;MQ0=0;QD=0.59;SB=20.08 GT:DP:GL:GQ 0/1:26:-13.30,-7.84,-71.68:54.59
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chr20 377722 rs35381164 G A 602.86 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=1.23;MQ=58.13;MQ0=0;OQ=509.52;QD=10.84;SB=-243.54 GT:DP:GL:GQ 0/1:42:-66.90,-12.67,-75.06:99
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chr20 377910 . T C 161.52 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=17;Dels=0.00;HRun=1;HaplotypeScore=0.93;MQ=57.29;MQ0=0;OQ=223.40;QD=11.76;SB=-30.64 GT:DP:GL:GQ 0/1:17:-30.75,-5.12,-35.56:99
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chr20 378736 . C T 161.99 PASS AB=0.35;AC=1;AF=0.50;AN=2;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.45;MQ=59.19;MQ0=0;OQ=1133.32;QD=21.79;SB=-430.83 GT:DP:GL:GQ 0/1:50:-131.68,-15.06,-58.67:99
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chr20 379502 rs8124729 T C 138.83 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=92;Dels=0.00;HRun=1;HaplotypeScore=7.93;MQ=59.10;MQ0=0;OQ=1215.62;QD=13.07;SB=-552.99 GT:DP:GL:GQ 0/1:92:-152.55,-27.71,-206.69:99
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chr20 380686 rs448362 T C 373.60 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=4.05;MQ=59.33;MQ0=0;OQ=941.01;QD=15.18;SB=-414.22 GT:DP:GL:GQ 0/1:61:-115.77,-18.38,-113.16:99
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chr20 380779 rs418400 C T 462.59 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.48;MQ0=0;OQ=576.07;QD=13.09;SB=-96.14 GT:DP:GL:GQ 0/1:43:-77.34,-16.44,-79.76:99
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chr20 382104 . G A 361.83 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=35;Dels=0.00;HRun=1;HaplotypeScore=1.15;MQ=53.70;MQ0=0;OQ=575.86;QD=15.15;SB=-292.79 GT:DP:GL:GQ 0/1:35:-71.42,-10.55,-55.85:99
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chr20 382184 . A T 0 FDRtranche2.00to10.00+ AB=0.51;AC=1;AF=0.50;AN=2;DP=33;Dels=0.04;HRun=20;HaplotypeScore=23.43;MQ=48.44;MQ0=0;OQ=585.36;QD=10.84;SB=-275.77 GT:DP:GL:GQ 0/1:33:-71.47,-9.65,-44.24:99
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chr20 382639 rs8121061 G A 97.61 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.75;MQ0=0;OQ=1247.84;QD=20.80;SB=-232.73 GT:DP:GL:GQ 0/1:60:-146.15,-18.08,-84.14:99
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chr20 382731 rs8115998 A C 612.86 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=52.84;MQ0=0;OQ=959.42;QD=13.71;SB=-406.82 GT:DP:GL:GQ 0/1:67:-119.40,-20.18,-123.06:99
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chr20 383258 rs6515826 T A 609.12 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=71.47;MQ0=0;OQ=1145.03;QD=15.90;SB=-241.75 GT:DP:GL:GQ 0/1:72:-139.47,-21.69,-135.44:99
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chr20 383442 rs6052112 G C 468.15 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=60.00;MQ0=0;OQ=531.93;QD=14.78;SB=-169.45 GT:DP:GL:GQ 0/1:35:-67.03,-10.55,-81.65:99
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chr20 384697 rs284911 A G 424.27 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=0.89;MQ=55.40;MQ0=0;OQ=487.27;QD=9.55;SB=-119.26 GT:DP:GL:GQ 0/1:51:-67.39,-15.38,-115.55:99
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chr20 385462 rs284912 G A 691.95 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=58.60;MQ0=1;OQ=1021.67;QD=15.72;SB=-480.45 GT:DP:GL:GQ 0/1:64:-124.74,-19.29,-109.93:99
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chr20 386975 rs205897 A T 0 FDRtranche2.00to10.00+ AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.03;HRun=16;HaplotypeScore=21.91;MQ=57.10;MQ0=0;OQ=549.10;QD=8.45;SB=-298.51 GT:DP:GL:GQ 0/1:58:-78.18,-19.99,-133.37:99
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chr20 387105 rs157795 G A 371.78 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=2;HaplotypeScore=2.47;MQ=59.71;MQ0=0;OQ=922.53;QD=14.19;SB=-381.38 GT:DP:GL:GQ 0/1:64:-114.82,-19.28,-125.64:99
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chr20 388443 rs150207 C T 478.81 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=1.34;MQ=59.71;MQ0=0;OQ=1081.54;QD=16.64;SB=-518.73 GT:DP:GL:GQ 0/1:61:-129.81,-18.38,-101.66:99
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chr20 389108 rs157796 C G 525.01 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=2.47;MQ=63.69;MQ0=0;OQ=1152.54;QD=13.72;SB=-599.84 GT:DP:GL:GQ 0/1:79:-142.37,-23.83,-184.96:99
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chr20 390323 rs157800 T A 341.06 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=59.62;MQ0=0;OQ=949.19;QD=15.56;SB=-365.60 GT:DP:GL:GQ 0/1:60:-116.27,-18.07,-110.85:99
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chr20 391798 rs205898 A G 707.69 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.63;MQ=59.74;MQ0=0;OQ=1051.75;QD=14.41;SB=-534.58 GT:DP:GL:GQ 0/1:70:-129.54,-21.09,-138.27:99
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chr20 391896 rs157801 C G 479.12 PASS AB=0.36;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=2.69;MQ=60.00;MQ0=0;OQ=874.65;QD=19.88;SB=-432.61 GT:DP:GL:GQ 0/1:41:-103.12,-12.38,-61.40:99
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chr20 394309 rs6107375 C G 327.25 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=213.61;MQ0=0;OQ=1413.53;QD=39.26;SB=-452.19 GT:DP:GL:GQ 1/1:34:-144.95,-10.25,-0.01:99
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chr20 396659 rs205900 G A 850.53 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.11;MQ0=0;OQ=2661.03;QD=36.45;SB=-1113.97 GT:DP:GL:GQ 1/1:69:-269.72,-20.79,-0.03:99
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chr20 396913 rs150208 C A 747.83 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=859.06;QD=13.22;SB=-404.99 GT:DP:GL:GQ 0/1:63:-108.16,-18.97,-123.96:99
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chr20 397893 rs157812 G A 654.01 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.93;MQ0=0;OQ=1207.88;QD=16.32;SB=-505.02 GT:DP:GL:GQ 0/1:74:-146.37,-22.30,-121.01:99
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chr20 397901 rs157811 A T 583.63 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.04;MQ0=0;OQ=1146.35;QD=15.08;SB=-536.40 GT:DP:GL:GQ 0/1:76:-140.81,-22.89,-147.66:99
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chr20 401101 rs150209 T C 453.82 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=2.87;MQ=59.73;MQ0=0;OQ=2293.19;QD=32.76;SB=-807.07 GT:DP:GL:GQ 1/1:66:-232.93,-19.88,-0.02:99
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chr20 406373 rs157802 C T 596.31 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=59.30;MQ0=0;OQ=1100.31;QD=18.34;SB=-428.84 GT:DP:GL:GQ 0/1:58:-130.80,-17.48,-79.00:99
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chr20 413710 . C A 39.75 DPFilter;HARD_TO_VALIDATE;LowQual AB=0.84;AC=1;AF=0.50;AN=2;DP=23;Dels=0.00;HRun=20;HaplotypeScore=14.27;MQ=54.96;MQ0=5;QD=1.28;SB=2.03 GT:DP:GL:GQ 0/1:23:-14.19,-6.93,-64.34:72.59
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chr20 416186 rs41306790 G A 522.67 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=2.72;MQ=51.24;MQ0=1;OQ=1006.57;QD=17.35;SB=-457.27 GT:DP:GL:GQ 0/1:57:-124.32,-20.38,-95.91:99
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chr20 418979 . C T 0 FDRtranche2.00to10.00+ AB=0.54;AC=1;AF=0.50;AN=2;DP=53;Dels=0.00;HRun=16;HaplotypeScore=22.93;MQ=53.05;MQ0=1;OQ=456.23;QD=5.50;SB=50.17 GT:DP:GL:GQ 0/1:53:-64.90,-15.99,-114.54:99
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chr20 419553 rs34362304 A C 3.49 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=15.72;MQ=65.92;MQ0=0;OQ=616.31;QD=7.70;SB=-242.40 GT:DP:GL:GQ 0/1:70:-86.02,-21.10,-151.66:99
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chr20 421846 rs205902 A T 217.46 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=2;HaplotypeScore=3.93;MQ=58.97;MQ0=0;OQ=1083.31;QD=18.36;SB=-423.89 GT:DP:GL:GQ 0/1:59:-129.39,-17.77,-92.59:99
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chr20 423187 rs55715142 T C 647.27 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=58.96;MQ0=0;OQ=954.97;QD=13.26;SB=-443.94 GT:DP:GL:GQ 0/1:71:-120.17,-21.39,-155.97:99
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chr20 427545 . T C 452.71 PASS AB=0.45;AC=1;AF=0.50;AN=2;DP=72;Dels=0.00;HRun=0;HaplotypeScore=2.03;MQ=59.37;MQ0=0;OQ=1163.17;QD=15.93;SB=-491.27 GT:DP:GL:GQ 0/1:72:-141.29,-21.69,-134.93:99
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chr20 434231 . C G 0.57 FDRtranche2.00to10.00 AB=0.47;AC=1;AF=0.50;AN=2;DP=34;Dels=0.00;HRun=0;HaplotypeScore=11.23;MQ=51.63;MQ0=0;OQ=600.75;QD=16.24;SB=-215.67 GT:DP:GL:GQ 0/1:34:-73.60,-10.25,-72.02:99
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chr20 434741 rs205880 C T 432.46 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=45;Dels=0.00;HRun=1;HaplotypeScore=1.88;MQ=46.44;MQ0=0;OQ=1022.91;QD=20.06;SB=-511.17 GT:DP:GL:GQ 0/1:45:-119.14,-13.56,-51.59:99
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chr20 436611 rs127316 G A 657.74 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.50;MQ0=0;OQ=3395.71;QD=40.91;SB=-1656.72 GT:DP:GL:GQ 1/1:83:-338.57,-25.00,-0.02:99
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chr20 436930 rs74119 C T 548.30 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=1.99;MQ=55.32;MQ0=0;OQ=1142.00;QD=15.03;SB=-533.69 GT:DP:GL:GQ 0/1:75:-140.07,-22.59,-150.94:99
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chr20 440349 rs428129 C T 117.66 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.01;HRun=0;HaplotypeScore=8.30;MQ=59.25;MQ0=0;OQ=1119.16;QD=14.92;SB=-554.38 GT:DP:GL:GQ 0/1:73:-136.89,-21.69,-131.71:99
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chr20 441205 rs4815701 G T 750.78 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=59.10;MQ0=0;OQ=1283.58;QD=17.35;SB=-445.01 GT:DP:GL:GQ 0/1:72:-153.33,-21.69,-105.78:99
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chr20 441609 rs7267034 T C 751.66 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=876.93;QD=13.49;SB=-428.24 GT:DP:GL:GQ 0/1:65:-110.56,-19.58,-135.28:99
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chr20 442808 rs34970820 C T 439.28 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=3.16;MQ=59.08;MQ0=0;OQ=1206.91;QD=18.29;SB=-504.03 GT:DP:GL:GQ 0/1:64:-143.27,-19.29,-90.65:99
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chr20 450937 rs4815707 C T 786.84 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=1155.70;QD=16.05;SB=-556.37 GT:DP:GL:GQ 0/1:72:-140.54,-21.69,-131.51:99
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chr20 452502 . C A 22.61 ABFilter;DPFilter;LowQual AB=0.83;AC=1;AF=0.50;AN=2;DP=39;Dels=0.00;HRun=20;HaplotypeScore=19.25;MQ=53.08;MQ0=0;QD=0.43;SB=50.18 GT:DP:GL:GQ 0/1:39:-17.29,-11.75,-117.96:55.42
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chr20 452513 . A C 0.43 FDRtranche2.00to10.00 AB=0.62;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=0;HaplotypeScore=13.04;MQ=52.82;MQ0=0;OQ=649.94;QD=8.33;SB=-331.67 GT:DP:GL:GQ 0/1:70:-89.37,-21.09,-153.20:99
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chr20 452789 rs7274244 C T 525.94 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=57.59;MQ0=0;OQ=2502.36;QD=38.50;SB=-1042.71 GT:DP:GL:GQ 1/1:62:-253.83,-18.67,-0.01:99
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chr20 453298 rs55897393 T C 301.56 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=2;HaplotypeScore=0.89;MQ=58.43;MQ0=0;OQ=519.51;QD=13.67;SB=-259.96 GT:DP:GL:GQ 0/1:38:-66.68,-11.45,-76.08:99
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chr20 454312 . G A 0 FDRtranche2.00to10.00+ AB=0.84;AC=1;AF=0.50;AN=2;DP=54;Dels=0.01;HRun=17;HaplotypeScore=6.94;MQ=50.00;MQ0=1;OQ=58.42;QD=0.79;SB=50.11 GT:DP:GL:GQ 0/1:54:-25.11,-15.98,-149.78:91.25
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chr20 454882 rs205876 A G 457.77 PASS AB=0.64;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.64;MQ0=0;OQ=506.28;QD=7.91;SB=-224.23 GT:DP:GL:GQ 0/1:62:-72.60,-18.68,-159.48:99
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chr20 455689 . A G 45.44 ABFilter;DPFilter;LowQual AB=0.90;AC=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=0;HaplotypeScore=21.08;MQ=55.70;MQ0=0;QD=0.74;SB=62.23 GT:DP:GL:GQ 0/1:51:-23.20,-15.37,-177.24:78.27
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chr20 456373 . G A 136.60 PASS AB=0.59;AC=1;AF=0.50;AN=2;DP=62;Dels=0.00;HRun=0;HaplotypeScore=5.48;MQ=58.69;MQ0=0;OQ=828.29;QD=12.94;SB=-380.14 GT:DP:GL:GQ 0/1:62:-104.80,-18.69,-116.37:99
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chr20 466752 rs204658 A G 385.70 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=0;HaplotypeScore=4.43;MQ=59.44;MQ0=0;OQ=547.56;QD=13.36;SB=-241.43 GT:DP:GL:GQ 0/1:38:-69.50,-11.46,-63.82:99
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chr20 476866 rs6133162 C T 643.31 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.31;MQ=52.33;MQ0=0;OQ=623.82;QD=11.77;SB=-327.85 GT:DP:GL:GQ 0/1:50:-80.73,-15.06,-104.15:99
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chr20 479221 rs204659 C T 724.58 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=1.85;MQ=59.70;MQ0=0;OQ=736.44;QD=11.88;SB=-356.86 GT:DP:GL:GQ 0/1:61:-95.32,-18.39,-118.99:99
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chr20 479978 rs188205 C A 675.85 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1172.32;QD=14.65;SB=-546.58 GT:DP:GL:GQ 0/1:80:-144.61,-24.09,-148.49:99
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chr20 480059 rs204661 T A 759.41 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=1.33;MQ=59.67;MQ0=0;OQ=698.48;QD=12.25;SB=-361.59 GT:DP:GL:GQ 0/1:57:-90.30,-17.17,-126.99:99
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chr20 480068 rs204662 G T 453.10 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.49;MQ=59.67;MQ0=0;OQ=427.49;QD=7.63;SB=-163.49 GT:DP:GL:GQ 0/1:50:-64.36,-18.33,-119.48:99
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chr20 480103 rs204663 C G 512.29 PASS AB=0.66;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=1;HaplotypeScore=2.36;MQ=59.31;MQ0=0;OQ=626.09;QD=10.26;SB=-299.12 GT:DP:GL:GQ 0/1:57:-83.09,-17.19,-151.89:99
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chr20 480805 rs204664 G A 215.92 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=5.77;MQ=55.20;MQ0=1;OQ=944.83;QD=18.53;SB=-496.13 GT:DP:GL:GQ 0/1:49:-112.53,-14.77,-69.08:99
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chr20 480897 rs204665 C T 608.25 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.62;MQ=58.71;MQ0=0;OQ=643.79;QD=12.15;SB=-250.26 GT:DP:GL:GQ 0/1:51:-83.03,-15.37,-107.01:99
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chr20 480925 rs204666 A G 329.26 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=2;HaplotypeScore=0.32;MQ=60.00;MQ0=0;OQ=728.06;QD=10.11;SB=-259.36 GT:DP:GL:GQ 0/1:66:-95.98,-19.89,-153.53:99
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chr20 481889 rs204667 C G 271.12 PASS AB=0.33;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=2.00;MQ=54.76;MQ0=0;OQ=1583.96;QD=26.40;SB=-445.37 GT:DP:GL:GQ 0/1:60:-179.76,-18.08,-87.20:99
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chr20 482000 . G A 0 FDRtranche2.00to10.00+ AB=0.84;AC=1;AF=0.50;AN=2;DP=31;Dels=0.00;HRun=20;HaplotypeScore=11.86;MQ=55.46;MQ0=0;OQ=72.24;QD=1.64;SB=26.10 GT:DP:GL:GQ 0/1:31:-19.85,-9.34,-90.67:99
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chr20 482563 rs204668 C T 570.76 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=59.62;MQ0=0;OQ=1173.58;QD=19.56;SB=-502.12 GT:DP:GL:GQ 0/1:60:-138.72,-18.08,-83.35:99
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chr20 483497 rs204669 T A 735.29 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=2.12;MQ=60.00;MQ0=0;OQ=991.66;QD=13.97;SB=-457.18 GT:DP:GL:GQ 0/1:70:-123.53,-21.08,-142.49:99
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chr20 484536 rs204670 T G 712.45 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2562.05;QD=34.62;SB=-952.78 GT:DP:GL:GQ 1/1:74:-259.82,-22.29,-0.03:99
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chr20 484763 rs204671 G T 226.02 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=6.55;MQ=59.70;MQ0=0;OQ=1302.85;QD=16.70;SB=-438.89 GT:DP:GL:GQ 0/1:75:-156.16,-22.59,-106.93:99
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chr20 484785 rs204672 A G 629.14 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=1.56;MQ=59.72;MQ0=0;OQ=2802.32;QD=34.60;SB=-1190.54 GT:DP:GL:GQ 1/1:81:-283.86,-24.41,-0.04:99
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chr20 484859 rs204673 G A 36.89 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=2;HaplotypeScore=8.72;MQ=58.20;MQ0=0;OQ=1195.15;QD=17.58;SB=-529.75 GT:DP:GL:GQ 0/1:68:-143.28,-20.49,-112.88:99
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chr20 485075 rs6084915 T A 277.27 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.83;MQ0=0;OQ=1104.28;QD=17.25;SB=-402.76 GT:DP:GL:GQ 0/1:63:-132.69,-18.97,-111.37:99
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chr20 485079 rs204674 G A 626.37 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=898.22;QD=13.82;SB=-322.37 GT:DP:GL:GQ 0/1:63:-112.09,-18.98,-126.62:99
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chr20 485276 rs204675 T C 497.59 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.93;MQ0=0;OQ=1663.49;QD=34.66;SB=-348.80 GT:DP:GL:GQ 1/1:46:-169.95,-13.86,-0.01:99
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chr20 485438 rs204676 T C 242.53 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=1;HaplotypeScore=-0.18;MQ=59.42;MQ0=0;OQ=1420.59;QD=27.85;SB=-280.44 GT:DP:GL:GQ 1/1:47:-145.70,-14.19,-0.06:99
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chr20 485505 rs204677 C A 284.08 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=29;Dels=0.00;HRun=1;HaplotypeScore=1.63;MQ=53.30;MQ0=2;OQ=289.76;QD=8.05;SB=-31.35 GT:DP:GL:GQ 0/1:29:-40.99,-8.73,-61.28:99
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chr20 485525 . A T 40.69 LowQual AB=0.88;AC=1;AF=0.50;AN=2;DP=24;Dels=0.00;HRun=0;HaplotypeScore=49.63;MQ=32.15;MQ0=1;QD=1.23;SB=-40.67 GT:DP:GL:GQ 0/1:24:-14.58,-7.23,-71.68:73.53
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chr20 485678 rs204678 T C 6.35 PASS AB=0.84;AC=1;AF=0.50;AN=2;DB;DP=29;Dels=0.00;HRun=2;HaplotypeScore=0.87;MQ=58.64;MQ0=0;OQ=60.29;QD=1.94;SB=35.15 GT:DP:GL:GQ 0/1:29:-18.05,-8.73,-99.81:93.13
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chr20 486203 rs454174 T C 307.62 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.64;MQ0=0;OQ=582.88;QD=11.21;SB=-178.55 GT:DP:GL:GQ 0/1:50:-76.63,-15.06,-119.17:99
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chr20 486230 rs7267458 C T 606.50 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.74;MQ=60.00;MQ0=0;OQ=850.29;QD=15.18;SB=-378.08 GT:DP:GL:GQ 0/1:56:-105.18,-16.87,-108.09:99
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chr20 486235 rs454179 T C 715.41 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1947.07;QD=34.16;SB=-988.06 GT:DP:GL:GQ 1/1:55:-198.31,-16.57,-0.02:99
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chr20 486247 rs6084919 C T 760.89 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.70;MQ0=0;OQ=1017.76;QD=16.15;SB=-446.93 GT:DP:GL:GQ 0/1:62:-123.74,-18.68,-110.92:99
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chr20 486829 rs4815752 T C 622.31 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=0.96;MQ=59.43;MQ0=0;OQ=618.57;QD=12.13;SB=-202.19 GT:DP:GL:GQ 0/1:50:-80.20,-15.06,-112.77:99
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chr20 487018 rs397883 T G 654.19 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.47;MQ=59.24;MQ0=0;OQ=867.86;QD=11.73;SB=-280.67 GT:DP:GL:GQ 0/1:73:-112.06,-21.99,-146.36:99
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chr20 487123 rs511353 G C 263.89 PASS AB=0.68;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=4.40;MQ=58.82;MQ0=0;OQ=410.30;QD=8.21;SB=-147.15 GT:DP:GL:GQ 0/1:48:-58.79,-14.48,-140.17:99
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chr20 487363 rs204679 G A 633.04 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.29;MQ0=0;OQ=682.16;QD=13.12;SB=-339.80 GT:DP:GL:GQ 0/1:48:-85.97,-14.47,-85.10:99
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chr20 487572 rs6076750 G A 203.09 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=58.90;MQ0=0;OQ=1344.14;QD=18.67;SB=-603.67 GT:DP:GL:GQ 0/1:72:-159.39,-21.69,-112.93:99
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chr20 487650 rs204680 T G 676.59 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1413.29;QD=28.27;SB=-721.34 GT:DP:GL:GQ 1/1:47:-144.96,-14.17,-0.05:99
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chr20 487833 rs204681 A C 633.53 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=1.66;MQ=71.55;MQ0=0;OQ=2596.95;QD=34.63;SB=-1125.62 GT:DP:GL:GQ 1/1:74:-263.30,-22.29,-0.02:99
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chr20 487878 rs119432 G A 655.98 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.88;MQ0=0;OQ=1130.43;QD=16.87;SB=-501.07 GT:DP:GL:GQ 0/1:65:-135.90,-19.58,-117.51:99
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chr20 487926 rs1022111 G T 465.81 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=2.60;MQ=59.44;MQ0=0;OQ=906.25;QD=13.53;SB=-364.08 GT:DP:GL:GQ 0/1:67:-114.09,-20.18,-128.04:99
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chr20 488707 rs13037309 C A 1.30 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.02;HRun=6;HaplotypeScore=18.67;MQ=102.67;MQ0=0;OQ=568.64;QD=10.34;SB=-211.56 GT:DP:GL:GQ 0/1:53:-75.81,-15.66,-106.24:99
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chr20 488729 rs204683 A G 779.89 Indel AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=9.76;MQ=121.79;MQ0=0;QD=13.00;SB=-411.28 GT:DP:GL:GQ 0/1:53:-100.98,-19.70,-100.87:99
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chr20 488747 rs204684 T C 28.75 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=4;HaplotypeScore=2.57;MQ=120.75;MQ0=0;OQ=1901.35;QD=30.67;SB=-964.30 GT:DP:GL:GQ 1/1:56:-193.75,-16.88,-0.03:99
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chr20 488987 rs62190008 C T 584.67 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=57.46;MQ0=0;OQ=830.65;QD=12.40;SB=-197.84 GT:DP:GL:GQ 0/1:64:-105.63,-19.28,-135.81:99
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chr20 489262 rs204685 G T 230.94 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=4;HaplotypeScore=1.00;MQ=59.43;MQ0=0;OQ=1239.12;QD=16.97;SB=-363.20 GT:DP:GL:GQ 0/1:72:-148.88,-21.68,-114.36:99
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chr20 489335 rs204686 G A 730.73 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=1236.75;QD=17.92;SB=-553.56 GT:DP:GL:GQ 0/1:69:-147.74,-20.78,-117.25:99
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chr20 489589 rs2006782 T G 641.32 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=635.38;QD=11.99;SB=-320.49 GT:DP:GL:GQ 0/1:53:-82.79,-15.97,-100.15:99
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chr20 489855 rs204687 A G 744.38 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.74;MQ0=0;OQ=2641.20;QD=36.18;SB=-1039.78 GT:DP:GL:GQ 1/1:72:-267.72,-21.68,-0.02:99
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chr20 490674 rs204688 T C 602.97 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.24;MQ0=0;OQ=2370.11;QD=29.63;SB=-1128.06 GT:DP:GL:GQ 1/1:76:-240.67,-22.92,-0.07:99
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chr20 490777 rs204689 A G 610.12 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=1991.51;QD=34.94;SB=-663.93 GT:DP:GL:GQ 1/1:56:-202.76,-16.87,-0.02:99
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chr20 490863 rs204690 A G 314.81 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.64;MQ0=0;OQ=1106.23;QD=17.28;SB=-520.04 GT:DP:GL:GQ 0/1:63:-132.88,-18.98,-105.54:99
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chr20 491286 rs204691 T C 256.62 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=2;HaplotypeScore=1.97;MQ=59.61;MQ0=0;OQ=1831.44;QD=31.04;SB=-879.58 GT:DP:GL:GQ 1/1:57:-186.78,-17.19,-0.05:99
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chr20 491301 rs204692 G A 476.18 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=2;HaplotypeScore=1.14;MQ=59.59;MQ0=0;OQ=2083.80;QD=37.21;SB=-1027.68 GT:DP:GL:GQ 1/1:52:-211.98,-15.66,-0.01:99
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chr20 491638 rs204693 C T 512.81 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=59.64;MQ0=0;OQ=2470.52;QD=38.60;SB=-1244.66 GT:DP:GL:GQ 1/1:63:-250.66,-18.98,-0.02:99
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chr20 491744 rs204694 C T 505.59 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=3.34;MQ=59.70;MQ0=0;OQ=1161.02;QD=18.43;SB=-499.09 GT:DP:GL:GQ 0/1:61:-137.76,-18.37,-96.82:99
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chr20 492040 rs17770500 C T 678.76 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=1.21;MQ=59.52;MQ0=0;OQ=959.33;QD=16.54;SB=-488.09 GT:DP:GL:GQ 0/1:57:-116.40,-17.18,-88.48:99
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chr20 492417 rs13043344 G C 675.58 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1302.56;QD=19.74;SB=-645.48 GT:DP:GL:GQ 0/1:65:-153.12,-19.59,-129.78:99
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chr20 492914 rs205891 G A 708.33 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.34;MQ0=0;OQ=2237.22;QD=39.25;SB=-1046.40 GT:DP:GL:GQ 1/1:57:-227.32,-17.17,-0.02:99
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chr20 493197 rs204696 T G 624.25 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.79;MQ0=0;OQ=2616.93;QD=35.85;SB=-1246.15 GT:DP:GL:GQ 1/1:73:-265.30,-21.98,-0.02:99
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chr20 493876 rs204698 C T 7.57 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=20.27;MQ=86.61;MQ0=0;OQ=2778.74;QD=35.62;SB=-1235.44 GT:DP:GL:GQ 1/1:74:-289.07,-22.29,-7.61:99
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chr20 494178 rs204699 T A 173.40 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=3.71;MQ=58.23;MQ0=0;OQ=1875.24;QD=30.74;SB=-232.87 GT:DP:GL:GQ 1/1:53:-191.13,-15.97,-0.02:99
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chr20 498090 . T A 125.63 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=71;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.74;MQ0=0;OQ=1293.72;QD=17.97;SB=-655.41 GT:DP:GL:GQ 0/1:71:-154.04,-21.39,-114.28:99
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chr20 498164 rs282144 A G 444.83 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1511.18;QD=34.34;SB=-436.18 GT:DP:GL:GQ 1/1:41:-154.71,-12.35,-0.01:99
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chr20 498260 rs2665783 A C 327.46 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.23;MQ0=0;OQ=1897.92;QD=34.51;SB=-890.65 GT:DP:GL:GQ 1/1:54:-193.39,-16.26,-0.02:99
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chr20 498815 rs2665782 A C 391.98 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=68.70;MQ0=0;OQ=2713.57;QD=33.50;SB=-1214.28 GT:DP:GL:GQ 1/1:79:-274.97,-23.80,-0.03:99
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chr20 498818 rs4398333 T C 277.59 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=2;HaplotypeScore=0.32;MQ=69.21;MQ0=0;OQ=2548.49;QD=31.08;SB=-1282.52 GT:DP:GL:GQ 1/1:79:-258.50,-23.82,-0.07:99
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chr20 498887 rs176057 G A 277.02 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.03;HRun=0;HaplotypeScore=0.79;MQ=73.40;MQ0=0;OQ=943.54;QD=29.49;SB=-216.34 GT:DP:GL:GQ 1/1:26:-97.95,-7.53,-0.01:75.24
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chr20 499034 rs4389387 C T 7.23 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=4;HaplotypeScore=0.16;MQ=58.18;MQ0=0;OQ=1727.97;QD=39.27;SB=-333.44 GT:DP:GL:GQ 1/1:43:-176.39,-12.95,-0.01:99
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chr20 499396 rs6053023 C A 7.01 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;HRun=5;HaplotypeScore=0.00;MQ=49.62;MQ0=0;OQ=720.84;QD=34.33;SB=-387.45 GT:DP:GL:GQ 1/1:21:-75.68,-6.33,-0.01:63.19
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chr20 499921 rs282145 T C 827.65 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.59;MQ0=0;OQ=3320.39;QD=36.09;SB=-1372.21 GT:DP:GL:GQ 1/1:92:-331.04,-27.71,-0.03:99
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chr20 500487 . G A 247.79 PASS AB=0.60;AC=1;AF=0.50;AN=2;DP=24;Dels=0.00;HRun=0;HaplotypeScore=2.33;MQ=59.07;MQ0=0;OQ=269.82;QD=10.79;SB=-100.93 GT:DP:GL:GQ 0/1:24:-37.50,-7.24,-44.29:99
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chr20 503276 . G A 95.42 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=49;Dels=0.00;HRun=0;HaplotypeScore=3.38;MQ=81.30;MQ0=0;OQ=935.03;QD=17.00;SB=-240.55 GT:DP:GL:GQ 0/1:49:-111.55,-14.77,-67.82:99
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chr20 503352 rs282146 G A 804.21 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.50;MQ0=0;OQ=1597.28;QD=34.72;SB=-793.54 GT:DP:GL:GQ 1/1:43:-163.34,-12.97,-0.03:99
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chr20 505977 . G A 488.85 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.47;MQ=60.00;MQ0=0;OQ=1065.17;QD=14.79;SB=-414.80 GT:DP:GL:GQ 0/1:70:-130.90,-21.10,-120.33:99
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chr20 507434 rs282147 T C 486.86 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=1.66;MQ=57.80;MQ0=0;OQ=2260.12;QD=30.96;SB=-808.69 GT:DP:GL:GQ 1/1:69:-229.64,-20.80,-0.05:99
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chr20 509125 rs282149 T C 718.94 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.54;MQ0=0;OQ=1582.36;QD=31.65;SB=-559.09 GT:DP:GL:GQ 1/1:49:-161.85,-14.77,-0.03:99
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chr20 509543 rs282150 A T 5.80 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;HRun=5;HaplotypeScore=5.51;MQ=59.55;MQ0=0;OQ=3426.82;QD=37.25;SB=-1481.35 GT:DP:GL:GQ 1/1:90:-341.68,-27.11,-0.02:99
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chr20 509916 rs6084999 A G 762.57 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=59.34;MQ0=0;OQ=903.00;QD=12.37;SB=-388.24 GT:DP:GL:GQ 0/1:71:-114.99,-21.40,-139.68:99
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chr20 510314 rs2316866 G T 809.36 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=55.09;MQ0=0;OQ=4022.35;QD=36.90;SB=-1463.50 GT:DP:GL:GQ 1/1:108:-401.23,-32.53,-0.03:99
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chr20 510445 rs188156 C A 733.59 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.55;MQ0=0;OQ=2369.38;QD=36.45;SB=-1061.56 GT:DP:GL:GQ 1/1:65:-240.54,-19.57,-0.01:99
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chr20 511997 rs6085007 A C 503.20 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=1.98;MQ=59.35;MQ0=0;OQ=2084.54;QD=32.57;SB=-848.96 GT:DP:GL:GQ 1/1:62:-212.08,-18.68,-0.04:99
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chr20 512893 rs6053126 A G 355.07 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=2;HaplotypeScore=1.53;MQ=59.44;MQ0=0;OQ=2275.23;QD=30.75;SB=-958.40 GT:DP:GL:GQ 1/1:72:-231.18,-21.72,-0.07:99
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chr20 513933 rs6107585 G A 385.18 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=3.74;MQ=59.30;MQ0=0;OQ=2467.48;QD=37.39;SB=-1242.62 GT:DP:GL:GQ 1/1:63:-250.36,-18.98,-0.02:99
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chr20 514710 . G T 0 FDRtranche2.00to10.00+ AB=0.72;AC=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=20;HaplotypeScore=38.52;MQ=50.62;MQ0=1;OQ=188.97;QD=2.66;SB=-1.53 GT:DP:GL:GQ 0/1:51:-37.54,-15.36,-142.19:99
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chr20 514924 rs11698404 C T 224.89 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=2;HaplotypeScore=1.98;MQ=59.13;MQ0=0;OQ=1835.53;QD=37.46;SB=-668.39 GT:DP:GL:GQ 1/1:47:-187.16,-14.16,-0.02:99
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chr20 517358 . C A 21.47 DPFilter;LowQual AB=0.75;AC=1;AF=0.50;AN=2;DP=45;Dels=0.00;HRun=1;HaplotypeScore=9.22;MQ=58.16;MQ0=0;QD=0.35;SB=83.26 GT:DP:GL:GQ 0/1:45:-18.98,-13.56,-131.33:54.27
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chr20 521767 . T A 43.68 Indel;LowQual AB=0.85;AC=1;AF=0.50;AN=2;DP=24;Dels=0.00;HRun=0;HaplotypeScore=5.31;MQ=126.07;MQ0=1;QD=1.68;SB=-34.80 GT:DP:GL:GQ 0/1:24:-14.88,-7.23,-73.82:76.52
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chr20 525300 rs56204527 A C 365.22 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=2;HaplotypeScore=0.33;MQ=60.00;MQ0=0;OQ=2431.39;QD=35.24;SB=-1037.08 GT:DP:GL:GQ 1/1:69:-246.75,-20.78,-0.03:99
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chr20 525359 . C T 242.22 PASS AB=0.38;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=1;HaplotypeScore=1.30;MQ=58.88;MQ0=0;OQ=1535.76;QD=21.63;SB=-781.70 GT:DP:GL:GQ 0/1:70:-177.95,-21.09,-96.70:99
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chr20 525856 rs13042966 G A 289.42 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=2;HaplotypeScore=1.95;MQ=59.63;MQ0=0;OQ=2297.95;QD=37.06;SB=-801.70 GT:DP:GL:GQ 1/1:59:-233.40,-17.77,-0.02:99
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chr20 526018 rs58448358 A C 329.35 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=1;HaplotypeScore=1.66;MQ=59.42;MQ0=0;OQ=2693.13;QD=34.09;SB=-1264.89 GT:DP:GL:GQ 1/1:78:-272.93,-23.50,-0.03:99
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chr20 526423 rs62190042 C T 616.30 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.69;MQ0=0;OQ=993.88;QD=16.56;SB=-348.47 GT:DP:GL:GQ 0/1:60:-120.75,-18.08,-103.57:99
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chr20 526499 . A C 0.19 FDRtranche2.00to10.00+ AB=0.54;AC=1;AF=0.50;AN=2;DP=37;Dels=0.00;HRun=2;HaplotypeScore=5.82;MQ=57.95;MQ0=0;OQ=53.85;QD=0.94;SB=56.18 GT:DP:GL:GQ 0/1:37:-19.82,-11.15,-103.32:86.69
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chr20 527657 rs282152 A G 715.98 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.74;MQ0=0;OQ=2176.19;QD=34.54;SB=-1025.88 GT:DP:GL:GQ 1/1:61:-221.22,-18.37,-0.02:99
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chr20 528065 rs6038113 C T 728.62 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.65;MQ0=0;OQ=2419.29;QD=37.22;SB=-1082.47 GT:DP:GL:GQ 1/1:62:-245.54,-18.68,-0.02:99
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chr20 529248 rs282153 A T 642.48 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=59.30;MQ0=0;OQ=2224.35;QD=37.07;SB=-1003.60 GT:DP:GL:GQ 1/1:60:-226.03,-18.07,-0.01:99
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chr20 529483 rs35854102 G A 721.90 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.10;MQ0=1;OQ=2272.26;QD=38.51;SB=-1041.40 GT:DP:GL:GQ 1/1:57:-230.82,-17.17,-0.01:99
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chr20 529635 rs62190045 A C 255.54 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;HRun=0;HaplotypeScore=3.51;MQ=59.31;MQ0=0;OQ=2953.46;QD=29.53;SB=-1322.64 GT:DP:GL:GQ 1/1:95:-299.02,-28.64,-0.09:99
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chr20 530286 . G A 262.02 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=64.65;MQ0=0;OQ=800.85;QD=16.68;SB=-226.51 GT:DP:GL:GQ 0/1:45:-96.94,-13.57,-61.83:99
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chr20 531104 rs8122839 T G 592.84 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=2.20;MQ=59.47;MQ0=0;OQ=1745.74;QD=33.57;SB=-802.50 GT:DP:GL:GQ 1/1:51:-178.18,-15.36,-0.02:99
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chr20 534955 rs282162 G T 539.91 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=1.28;MQ=58.77;MQ0=0;OQ=2178.63;QD=35.72;SB=-1047.18 GT:DP:GL:GQ 1/1:60:-221.47,-18.07,-0.02:99
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chr20 536434 rs45509897 A C 648.60 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=1.73;MQ=59.64;MQ0=0;OQ=817.04;QD=12.77;SB=-385.10 GT:DP:GL:GQ 0/1:64:-104.27,-19.28,-124.31:99
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chr20 542780 rs1533087 T C 282.60 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=4.55;MQ=53.44;MQ0=0;OQ=612.10;QD=8.50;SB=-266.08 GT:DP:GL:GQ 0/1:71:-85.89,-21.40,-178.45:99
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chr20 543119 rs1969190 A C 4.07 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.05;HRun=0;HaplotypeScore=20.13;MQ=57.02;MQ0=1;OQ=645.88;QD=15.38;SB=-234.91 GT:DP:GL:GQ 0/1:40:-79.32,-11.45,-53.56:99
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chr20 543121 rs61498938 A C 118.66 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=8.15;MQ=57.23;MQ0=1;OQ=655.09;QD=14.56;SB=-331.78 GT:DP:GL:GQ 0/1:43:-81.75,-12.95,-73.64:99
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chr20 554714 rs6038199 G A 593.30 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.97;MQ=60.00;MQ0=0;OQ=2559.12;QD=39.99;SB=-1277.69 GT:DP:GL:GQ 1/1:64:-259.51,-19.28,-0.02:99
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chr20 555992 . A G 396.80 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=78;Dels=0.00;HRun=1;HaplotypeScore=0.93;MQ=59.46;MQ0=0;OQ=1066.34;QD=13.67;SB=-537.95 GT:DP:GL:GQ 0/1:78:-133.41,-23.49,-169.42:99
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chr20 561963 rs13040769 A G 577.87 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=1.39;MQ=59.45;MQ0=0;OQ=621.71;QD=14.80;SB=-244.62 GT:DP:GL:GQ 0/1:42:-78.11,-12.65,-80.06:99
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chr20 562987 rs2208181 C T 250.12 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=4.73;MQ=58.97;MQ0=0;OQ=695.88;QD=15.46;SB=-284.29 GT:DP:GL:GQ 0/1:42:-85.52,-12.65,-76.40:99
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chr20 563011 rs2208182 T C 606.07 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.09;MQ0=0;OQ=548.14;QD=11.92;SB=-295.63 GT:DP:GL:GQ 0/1:45:-71.66,-13.56,-99.07:99
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chr20 563178 rs2224324 G A 683.28 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.94;MQ=59.60;MQ0=0;OQ=869.04;QD=15.25;SB=-408.82 GT:DP:GL:GQ 0/1:55:-106.77,-16.58,-87.49:99
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chr20 565808 rs6139794 T C 719.38 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.78;MQ=59.15;MQ0=0;OQ=821.29;QD=11.57;SB=-382.88 GT:DP:GL:GQ 0/1:70:-106.51,-21.10,-146.39:99
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chr20 566259 rs1967741 T C 633.52 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=906.98;QD=12.60;SB=-390.21 GT:DP:GL:GQ 0/1:71:-115.39,-21.41,-138.74:99
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chr20 567392 rs6038241 C G 764.31 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.24;MQ0=0;OQ=1011.44;QD=16.05;SB=-453.76 GT:DP:GL:GQ 0/1:61:-122.81,-18.38,-140.38:99
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chr20 567899 rs6053598 T C 571.53 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.28;MQ0=0;OQ=591.43;QD=10.20;SB=-313.28 GT:DP:GL:GQ 0/1:56:-79.31,-16.88,-124.57:99
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chr20 568196 rs6053600 T C 655.63 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.67;MQ0=0;OQ=872.90;QD=12.47;SB=-318.87 GT:DP:GL:GQ 0/1:70:-111.66,-21.09,-154.07:99
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chr20 573888 . C A 0 FDRtranche2.00to10.00+ AB=0.69;AC=1;AF=0.50;AN=2;DP=54;Dels=0.01;HRun=17;HaplotypeScore=14.15;MQ=54.75;MQ0=0;OQ=230.42;QD=3.39;SB=49.88 GT:DP:GL:GQ 0/1:54:-42.60,-16.28,-139.13:99
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chr20 579425 rs2008022 C A 695.84 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=724.31;QD=14.78;SB=-291.24 GT:DP:GL:GQ 0/1:49:-90.48,-14.76,-80.95:99
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chr20 586863 rs59996052 G A 610.29 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.86;MQ=59.71;MQ0=0;OQ=1252.09;QD=19.56;SB=-618.66 GT:DP:GL:GQ 0/1:63:-147.47,-18.98,-94.49:99
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chr20 588573 . C T 166.08 PASS AB=0.52;AC=1;AF=0.50;AN=2;DP=64;Dels=0.00;HRun=2;HaplotypeScore=2.88;MQ=59.44;MQ0=0;OQ=1053.02;QD=15.72;SB=-381.86 GT:DP:GL:GQ 0/1:64:-127.86,-19.28,-119.74:99
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chr20 588742 . C A 235.78 PASS AB=0.46;AC=1;AF=0.50;AN=2;DP=44;Dels=0.00;HRun=1;HaplotypeScore=2.57;MQ=55.69;MQ0=0;OQ=718.44;QD=13.56;SB=-258.32 GT:DP:GL:GQ 0/1:44:-88.38,-13.25,-68.87:99
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chr20 588789 rs6116979 A G 388.95 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=2.19;MQ=55.80;MQ0=0;OQ=1367.67;QD=29.10;SB=-487.15 GT:DP:GL:GQ 1/1:43:-140.39,-12.97,-0.03:99
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chr20 588990 . A C 336.38 PASS AB=0.52;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.07;MQ0=0;OQ=764.97;QD=13.66;SB=-260.85 GT:DP:GL:GQ 0/1:56:-96.65,-16.87,-100.45:99
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chr20 589284 . C A 0 FDRtranche2.00to10.00+ AB=0.53;AC=1;AF=0.50;AN=2;DP=64;Dels=0.00;HRun=11;HaplotypeScore=2.97;MQ=88.33;MQ0=0;OQ=824.76;QD=12.50;SB=-363.77 GT:DP:GL:GQ 0/1:64:-105.04,-19.28,-118.88:99
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chr20 589893 rs6053783 G A 559.90 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=2.96;MQ=59.38;MQ0=0;OQ=2544.44;QD=37.98;SB=-1163.89 GT:DP:GL:GQ 1/1:65:-258.06,-19.59,-0.03:99
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chr20 591677 rs6116997 A G 417.32 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=3.18;MQ=59.60;MQ0=0;OQ=580.73;QD=10.19;SB=-254.34 GT:DP:GL:GQ 0/1:50:-76.43,-15.07,-102.69:99
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chr20 591919 rs6107716 T C 628.59 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=37;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=58.81;MQ0=0;OQ=374.60;QD=9.61;SB=-142.31 GT:DP:GL:GQ 0/1:37:-51.90,-11.16,-80.61:99
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chr20 592202 . A C 72 PASS AB=0.36;AC=1;AF=0.50;AN=2;DP=8;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=53.36;MQ0=0;OQ=51.09;QD=4.64;SB=-10.00 GT:DP:GL:GQ 0/1:8:-10.80,-2.41,-15.39:83.93
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chr20 593853 rs6053798 T C 783.58 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.13;MQ0=0;OQ=2075.26;QD=34.59;SB=-722.23 GT:DP:GL:GQ 1/1:60:-211.13,-18.07,-0.02:99
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chr20 594127 rs6085328 A G 517.19 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=59.59;MQ0=0;OQ=1627.26;QD=29.06;SB=-578.00 GT:DP:GL:GQ 1/1:50:-166.35,-15.08,-0.04:99
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chr20 595736 rs4815878 G A 737.99 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2877.82;QD=37.37;SB=-1348.02 GT:DP:GL:GQ 1/1:74:-291.39,-22.30,-0.02:99
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chr20 606122 rs11906176 G A 426.27 PASS AB=0.36;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=0.32;MQ=66.56;MQ0=0;OQ=1126.86;QD=21.26;SB=-540.56 GT:DP:GL:GQ 0/1:51:-131.33,-15.36,-63.65:99
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chr20 606835 rs6053866 T C 656.73 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=1998.43;QD=30.75;SB=-778.77 GT:DP:GL:GQ 1/1:61:-203.47,-18.39,-0.04:99
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chr20 612142 rs733822 G A 244.60 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=1;HaplotypeScore=4.18;MQ=59.13;MQ0=0;OQ=885.76;QD=18.45;SB=-419.46 GT:DP:GL:GQ 0/1:46:-105.72,-13.86,-67.05:99
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chr20 612372 . G A 15.79 ABFilter;DPFilter;LowQual AB=0.82;AC=1;AF=0.50;AN=2;DP=51;Dels=0.02;HRun=16;HaplotypeScore=22.08;MQ=55.62;MQ0=1;QD=0.25;SB=83.23 GT:DP:GL:GQ 0/1:51:-19.93,-15.07,-146.38:48.51
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chr20 615038 rs6139928 C T 377.67 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=36;Dels=0.00;HRun=1;HaplotypeScore=2.63;MQ=46.55;MQ0=2;OQ=633.85;QD=15.85;SB=-287.23 GT:DP:GL:GQ 0/1:36:-77.53,-10.86,-49.75:99
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chr20 615438 rs6038371 A G 624.34 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.61;MQ0=0;OQ=1197.65;QD=15.16;SB=-600.89 GT:DP:GL:GQ 0/1:77:-146.25,-23.20,-141.19:99
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chr20 616559 rs1535235 T C 720.75 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=2413.06;QD=34.97;SB=-1005.96 GT:DP:GL:GQ 1/1:67:-244.91,-20.18,-0.02:99
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chr20 616646 rs1535236 C G 755.16 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.63;MQ0=0;OQ=2398.89;QD=41.36;SB=-1069.09 GT:DP:GL:GQ 1/1:56:-243.49,-16.88,-0.02:99
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chr20 617651 rs7261818 A G 341.45 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=2.81;MQ=59.09;MQ0=0;OQ=1256.39;QD=27.31;SB=-565.94 GT:DP:GL:GQ 1/1:40:-129.26,-12.07,-0.04:99
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chr20 618257 rs1884760 T C 441.89 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.14;MQ=58.81;MQ0=0;OQ=1594.29;QD=28.99;SB=-808.66 GT:DP:GL:GQ 1/1:51:-163.07,-15.39,-0.05:99
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chr20 618315 . G A 391.54 PASS AB=0.45;AC=1;AF=0.50;AN=2;DP=64;Dels=0.00;HRun=1;HaplotypeScore=1.43;MQ=58.78;MQ0=0;OQ=1149.78;QD=17.69;SB=-595.59 GT:DP:GL:GQ 0/1:64:-137.55,-19.29,-104.94:99
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chr20 618749 rs4141735 A G 473.02 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;HRun=0;HaplotypeScore=1.80;MQ=59.77;MQ0=0;OQ=3129.18;QD=30.98;SB=-1419.68 GT:DP:GL:GQ 1/1:98:-316.58,-29.55,-0.08:99
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chr20 619497 rs4813794 T C 6.07 PASS AB=0.24;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=21.99;MQ=83.82;MQ0=0;OQ=1386.56;QD=19.26;SB=-591.35 GT:DP:GL:GQ 0/1:68:-162.46,-20.52,-58.93:99
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chr20 619591 rs4813795 C G 846.94 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=3115.28;QD=37.53;SB=-1271.44 GT:DP:GL:GQ 1/1:80:-315.18,-24.15,-0.07:99
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chr20 620567 rs7509386 A G 712.64 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.50;MQ0=0;OQ=928.09;QD=12.37;SB=-473.05 GT:DP:GL:GQ 0/1:75:-118.68,-22.59,-174.19:99
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chr20 621640 rs6053991 T C 266.44 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=3;HaplotypeScore=0.99;MQ=58.28;MQ0=0;OQ=2446.34;QD=30.97;SB=-1188.99 GT:DP:GL:GQ 1/1:76:-248.28,-22.92,-0.06:99
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chr20 621748 rs2180579 T C 708.41 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.76;MQ0=0;OQ=2234.21;QD=29.79;SB=-1076.23 GT:DP:GL:GQ 1/1:70:-227.06,-21.11,-0.06:99
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chr20 622107 rs2145098 G A 822.15 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2452.13;QD=39.55;SB=-1164.71 GT:DP:GL:GQ 1/1:61:-248.81,-18.37,-0.01:99
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chr20 622962 rs6139948 A G 786.71 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=60.00;MQ0=0;OQ=988.29;QD=13.54;SB=-445.59 GT:DP:GL:GQ 0/1:72:-123.81,-21.70,-134.66:99
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chr20 623322 rs2422512 C G 519.93 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.74;MQ0=0;OQ=1567.93;QD=21.48;SB=-589.13 GT:DP:GL:GQ 0/1:73:-182.09,-22.01,-127.68:99
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chr20 623645 rs1535233 G A 577.41 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.37;MQ0=0;OQ=2631.78;QD=39.88;SB=-1111.02 GT:DP:GL:GQ 1/1:66:-266.78,-19.88,-0.02:99
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chr20 623648 rs1000842 G C 654.46 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.37;MQ0=0;OQ=1075.43;QD=16.29;SB=-509.63 GT:DP:GL:GQ 0/1:65:-130.41,-19.59,-149.30:99
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chr20 623903 rs1535234 A G 204.40 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=0;HaplotypeScore=3.02;MQ=58.10;MQ0=0;OQ=1262.85;QD=21.40;SB=-261.61 GT:DP:GL:GQ 1/1:44:-140.05,-21.58,-10.18:99
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chr20 624442 rs6117164 T G 446.19 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=3.53;MQ=59.69;MQ0=0;OQ=742.35;QD=9.90;SB=-332.51 GT:DP:GL:GQ 0/1:73:-99.50,-21.99,-167.22:99
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chr20 624575 rs6085444 A T 430.21 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=2;HaplotypeScore=0.96;MQ=58.06;MQ0=0;OQ=2357.87;QD=38.03;SB=-878.32 GT:DP:GL:GQ 1/1:62:-239.39,-18.67,-0.01:99
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chr20 624804 rs4815892 G A 744.29 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=59.49;MQ0=0;OQ=789.17;QD=11.78;SB=-360.05 GT:DP:GL:GQ 0/1:67:-102.38,-20.18,-147.94:99
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chr20 625865 rs6038398 A G 653.84 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.12;MQ0=0;OQ=1202.64;QD=16.25;SB=-490.79 GT:DP:GL:GQ 0/1:71:-144.95,-21.40,-106.90:99
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chr20 626053 rs2422513 G T 647.89 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.68;MQ0=0;OQ=1110.67;QD=19.15;SB=-518.49 GT:DP:GL:GQ 1/1:57:-219.73,-116.74,-105.08:99
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chr20 626578 rs11697896 C G 684.73 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=1;HaplotypeScore=1.47;MQ=59.83;MQ0=0;OQ=877.29;QD=16.25;SB=-418.88 GT:DP:GL:GQ 0/1:52:-106.70,-15.69,-106.57:99
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chr20 626767 rs6085458 T G 604.55 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=1.15;MQ=59.19;MQ0=0;OQ=2008.53;QD=34.04;SB=-810.05 GT:DP:GL:GQ 1/1:58:-204.46,-17.47,-0.02:99
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chr20 627177 . C T 309.73 PASS AB=0.61;AC=1;AF=0.50;AN=2;DP=69;Dels=0.00;HRun=0;HaplotypeScore=3.10;MQ=59.21;MQ0=0;OQ=917.43;QD=12.92;SB=-422.72 GT:DP:GL:GQ 0/1:69:-115.81,-20.78,-148.17:99
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chr20 627271 rs6054046 A G 790.16 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.16;MQ0=0;OQ=1162.17;QD=16.14;SB=-488.28 GT:DP:GL:GQ 0/1:70:-140.59,-21.09,-123.06:99
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chr20 627367 rs6085464 G A 681.54 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=1.42;MQ=59.00;MQ0=0;OQ=958.86;QD=14.75;SB=-494.67 GT:DP:GL:GQ 0/1:62:-117.85,-18.68,-116.70:99
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chr20 627729 rs6085466 C T 10.35 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=10.10;MQ=58.28;MQ0=0;OQ=900.49;QD=15.01;SB=-261.59 GT:DP:GL:GQ 0/1:49:-108.10,-14.77,-73.35:99
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chr20 629164 rs6085469 C T 517.22 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=3.66;MQ=59.13;MQ0=0;OQ=743.83;QD=14.03;SB=-363.89 GT:DP:GL:GQ 0/1:51:-93.03,-15.36,-98.28:99
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chr20 629293 . C T 28.17 ABFilter;DPFilter;LowQual AB=0.80;AC=1;AF=0.50;AN=2;DP=38;Dels=0.00;HRun=18;HaplotypeScore=15.03;MQ=53.14;MQ0=0;QD=0.47;SB=65.17 GT:DP:GL:GQ 0/1:38:-17.55,-11.45,-110.59:61
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chr20 629951 rs13037917 A G 39.78 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=8.37;MQ=58.26;MQ0=0;OQ=471.94;QD=8.28;SB=-260.20 GT:DP:GL:GQ 0/1:50:-65.55,-15.07,-114.73:99
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chr20 630202 rs1075625 C T 220.33 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=5.06;MQ=58.85;MQ0=0;OQ=1221.94;QD=19.71;SB=-616.06 GT:DP:GL:GQ 0/1:59:-143.26,-17.78,-78.81:99
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chr20 631271 rs2017416 G A 249.26 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=1;HaplotypeScore=2.97;MQ=60.00;MQ0=0;OQ=809.48;QD=17.60;SB=-290.23 GT:DP:GL:GQ 0/1:44:-97.49,-13.26,-62.89:99
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chr20 631545 rs753321 T C 128.95 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.94;MQ=59.75;MQ0=0;OQ=1368.92;QD=18.25;SB=-109.74 GT:DP:GL:GQ 0/1:73:-162.16,-21.99,-110.36:99
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chr20 631616 rs753320 G A 601.72 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=60.00;MQ0=0;OQ=899.94;QD=14.06;SB=-203.20 GT:DP:GL:GQ 0/1:62:-111.95,-18.67,-130.32:99
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chr20 633116 rs6076977 A G 595.72 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=1.74;MQ=58.88;MQ0=0;OQ=1024.33;QD=17.66;SB=-423.34 GT:DP:GL:GQ 0/1:57:-122.89,-17.17,-93.99:99
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chr20 633348 rs7272807 A G 552.09 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.66;MQ0=0;OQ=1891.88;QD=27.82;SB=-944.36 GT:DP:GL:GQ 1/1:61:-192.83,-18.40,-0.06:99
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chr20 633714 rs11907301 C A 723.29 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=2034.81;QD=33.36;SB=-976.43 GT:DP:GL:GQ 1/1:58:-207.09,-17.47,-0.02:99
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chr20 634294 rs6085502 T C 431.52 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.49;MQ0=0;OQ=817.48;QD=9.97;SB=-420.85 GT:DP:GL:GQ 0/1:82:-109.74,-24.71,-200.37:99
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chr20 635772 rs6139971 T C 712.14 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=86;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=59.08;MQ0=0;OQ=1305.63;QD=15.18;SB=-386.26 GT:DP:GL:GQ 0/1:86:-159.75,-25.91,-172.47:99
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chr20 636843 rs6085519 C T 614.68 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=77.71;MQ0=0;OQ=935.83;QD=13.00;SB=-273.69 GT:DP:GL:GQ 0/1:70:-117.95,-21.08,-146.96:99
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chr20 637391 rs62192096 C A 542.74 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=57.01;MQ0=0;OQ=853.72;QD=12.02;SB=-385.73 GT:DP:GL:GQ 0/1:67:-108.84,-20.18,-133.62:99
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chr20 637428 rs62192097 G C 538.33 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=56.77;MQ0=0;OQ=722.50;QD=11.47;SB=-360.09 GT:DP:GL:GQ 0/1:56:-92.41,-16.87,-152.89:99
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chr20 639433 rs1884761 A C 323.38 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.03;MQ=58.95;MQ0=0;OQ=1946.32;QD=33.56;SB=-355.04 GT:DP:GL:GQ 1/1:56:-198.24,-16.87,-0.02:99
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chr20 639592 rs873544 G A 303.70 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=4.60;MQ=57.88;MQ0=0;OQ=687.53;QD=16.37;SB=-276.26 GT:DP:GL:GQ 0/1:41:-84.40,-12.36,-62.04:99
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chr20 639821 rs6054210 A G 585.50 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=2.56;MQ=59.80;MQ0=0;OQ=1933.65;QD=33.92;SB=-861.06 GT:DP:GL:GQ 1/1:56:-196.97,-16.87,-0.02:99
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chr20 640206 rs6085540 A G 823.52 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.13;MQ0=0;OQ=2513.07;QD=35.90;SB=-891.70 GT:DP:GL:GQ 1/1:70:-254.91,-21.08,-0.02:99
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chr20 640275 rs6076993 T C 777 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.27;MQ0=0;OQ=1736.06;QD=34.04;SB=-698.19 GT:DP:GL:GQ 1/1:51:-177.22,-15.37,-0.03:99
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chr20 641180 rs62192100 C T 573.62 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.23;MQ0=0;OQ=1279.40;QD=16.19;SB=-624.02 GT:DP:GL:GQ 0/1:78:-154.72,-23.50,-143.65:99
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chr20 641588 rs6054218 T C 666.66 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=1.24;MQ=56.34;MQ0=0;OQ=969.98;QD=12.60;SB=-391.89 GT:DP:GL:GQ 0/1:75:-122.89,-22.61,-152.64:99
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chr20 641622 rs6054219 G A 669.25 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.14;MQ=55.80;MQ0=0;OQ=829.70;QD=13.17;SB=-343.81 GT:DP:GL:GQ 0/1:59:-104.02,-17.77,-121.18:99
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chr20 641850 . T A 843.72 SnpCluster AB=0.55;AC=1;AF=0.50;AN=2;DP=67;Dels=0.00;HRun=0;HaplotypeScore=5.63;MQ=56.58;MQ0=0;QD=12.59;SB=-344.55 GT:DP:GL:GQ 0/1:67:-107.84,-20.18,-141.29:99
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chr20 641851 rs7345248 T A 862.32 SnpCluster AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=5.63;MQ=56.68;MQ0=0;QD=12.50;SB=-392.53 GT:DP:GL:GQ 0/1:68:-110.00,-20.48,-143.89:99
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chr20 641852 rs6139978 T A 946.69 SnpCluster AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=8;HaplotypeScore=4.63;MQ=56.73;MQ0=0;QD=13.52;SB=-440.52 GT:DP:GL:GQ 0/1:70:-119.04,-21.08,-139.99:99
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chr20 642061 rs4815893 C G 715.17 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=3634.25;QD=43.26;SB=-1666.08 GT:DP:GL:GQ 1/1:84:-362.43,-25.31,-0.03:99
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chr20 642587 rs6038485 T C 615.14 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=1085.78;QD=12.63;SB=-482.05 GT:DP:GL:GQ 0/1:83:-136.86,-25.00,-183.40:99
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chr20 642609 rs6038486 G A 218.61 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=90;Dels=0.00;HRun=4;HaplotypeScore=0.98;MQ=59.79;MQ0=0;OQ=1456.48;QD=16.18;SB=-545.56 GT:DP:GL:GQ 0/1:90:-176.04,-27.11,-168.50:99
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chr20 642894 rs1114734 T C 393.73 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=86;Dels=0.00;HRun=2;HaplotypeScore=1.16;MQ=60.00;MQ0=0;OQ=1000.15;QD=11.24;SB=-252.55 GT:DP:GL:GQ 0/1:86:-129.21,-25.91,-201.51:99
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chr20 643460 rs6085556 A G 385.62 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=117;Dels=0.00;HRun=0;HaplotypeScore=1.12;MQ=59.84;MQ0=0;OQ=1511.10;QD=12.92;SB=-757.35 GT:DP:GL:GQ 0/1:117:-189.64,-35.24,-259.14:99
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chr20 643670 rs8121910 T C 693.93 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=84;Dels=0.00;HRun=1;HaplotypeScore=0.95;MQ=60.00;MQ0=0;OQ=1256.11;QD=14.95;SB=-590.24 GT:DP:GL:GQ 0/1:84:-154.19,-25.30,-171.17:99
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chr20 644203 rs2422515 A C 719.99 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=2307.51;QD=34.96;SB=-868.08 GT:DP:GL:GQ 1/1:66:-234.36,-19.88,-0.02:99
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chr20 644211 rs2422516 C T 495.91 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=59.66;MQ0=0;OQ=2660.10;QD=39.70;SB=-1030.69 GT:DP:GL:GQ 1/1:67:-269.61,-20.18,-0.02:99
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chr20 644480 rs2422517 C A 582.22 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=1067.82;QD=13.87;SB=-407.13 GT:DP:GL:GQ 0/1:75:-132.66,-22.60,-120.63:99
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chr20 645600 rs6054280 T C 538.21 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=2.95;MQ=59.74;MQ0=0;OQ=722.62;QD=10.18;SB=-236.28 GT:DP:GL:GQ 0/1:68:-96.04,-20.50,-150.89:99
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chr20 646185 . C T 85.03 PASS AB=0.50;AC=1;AF=0.50;AN=2;DP=63;Dels=0.00;HRun=0;HaplotypeScore=6.59;MQ=58.95;MQ0=0;OQ=1112.60;QD=16.86;SB=-523.77 GT:DP:GL:GQ 0/1:63:-133.53,-18.99,-97.85:99
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chr20 646576 rs34742688 G C 535.55 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=839.67;QD=11.83;SB=-391.97 GT:DP:GL:GQ 0/1:68:-107.75,-20.50,-188.06:99
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chr20 647018 rs57324177 C G 463.01 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.29;MQ0=0;OQ=2353.73;QD=42.80;SB=-770.41 GT:DP:GL:GQ 1/1:54:-238.97,-16.27,-0.01:99
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chr20 647035 rs6117280 G C 364.75 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.87;MQ=58.56;MQ0=0;OQ=1851.16;QD=37.78;SB=-629.58 GT:DP:GL:GQ 1/1:47:-188.73,-14.18,-0.03:99
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chr20 647464 rs6077009 T A 496.38 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=2.01;MQ=50.23;MQ0=2;OQ=400.64;QD=10.83;SB=-137.78 GT:DP:GL:GQ 0/1:35:-53.89,-10.54,-77.80:99
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chr20 647918 rs56323034 C T 587.61 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=511.25;QD=11.89;SB=-252.25 GT:DP:GL:GQ 0/1:42:-67.07,-12.66,-79.45:99
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chr20 648108 rs6117288 G C 359.20 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=3.11;MQ=58.85;MQ0=0;OQ=2075.23;QD=39.16;SB=-884.10 GT:DP:GL:GQ 1/1:51:-214.50,-18.10,-3.39:99
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chr20 648176 rs55771173 T C 638.16 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=60.00;MQ0=0;OQ=851.26;QD=13.30;SB=-301.19 GT:DP:GL:GQ 0/1:63:-107.40,-18.99,-120.51:99
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chr20 649011 rs6077013 C G 592.54 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=2.65;MQ=58.46;MQ0=0;OQ=992.16;QD=13.97;SB=-241.18 GT:DP:GL:GQ 0/1:71:-123.90,-21.40,-177.03:99
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chr20 649145 rs6077014 G A 722.93 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.75;MQ0=0;OQ=2265.04;QD=37.75;SB=-984.30 GT:DP:GL:GQ 1/1:58:-230.11,-17.48,-0.02:99
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chr20 649321 rs6054310 C G 447.14 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.59;MQ0=0;OQ=2117.61;QD=37.81;SB=-812.12 GT:DP:GL:GQ 1/1:54:-215.39,-16.30,-0.04:99
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chr20 649512 rs4061071 C G 509.49 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=52.99;MQ0=0;OQ=997.41;QD=18.13;SB=-322.98 GT:DP:GL:GQ 0/1:53:-119.00,-15.98,-109.67:99
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chr20 649597 rs750159 A G 653.79 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.11;MQ0=0;OQ=2214.60;QD=30.34;SB=-931.73 GT:DP:GL:GQ 1/1:70:-225.11,-21.12,-0.07:99
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chr20 649631 rs750160 T C 758.20 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.14;MQ0=0;OQ=2292.19;QD=31.40;SB=-771.74 GT:DP:GL:GQ 1/1:71:-232.85,-21.40,-0.05:99
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chr20 649714 . T C 233.02 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=57;Dels=0.00;HRun=1;HaplotypeScore=2.85;MQ=57.89;MQ0=0;OQ=760.79;QD=13.12;SB=-307.33 GT:DP:GL:GQ 0/1:57:-96.53,-17.17,-122.67:99
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chr20 649959 rs56050507 A T 520 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=1.97;MQ=59.39;MQ0=0;OQ=2527.18;QD=36.63;SB=-1291.42 GT:DP:GL:GQ 1/1:68:-256.32,-20.48,-0.02:99
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chr20 650092 rs56272064 C T 727.04 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.68;MQ0=0;OQ=2315.52;QD=39.25;SB=-1173.30 GT:DP:GL:GQ 1/1:58:-235.16,-17.47,-0.02:99
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chr20 650297 . G A 400.68 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;HRun=1;HaplotypeScore=-0.06;MQ=59.47;MQ0=0;OQ=3135.79;QD=39.69;SB=-1592.62 GT:DP:GL:GQ 1/1:78:-317.18,-23.49,-0.02:99
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chr20 650319 rs60034763 G C 392.74 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.94;MQ=59.76;MQ0=0;OQ=3420.26;QD=43.85;SB=-1563.24 GT:DP:GL:GQ 1/1:78:-341.03,-23.50,-0.02:99
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chr20 650570 rs6085580 C T 258.37 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=2;HaplotypeScore=3.23;MQ=58.69;MQ0=0;OQ=3223.52;QD=39.31;SB=-1577.37 GT:DP:GL:GQ 1/1:81:-325.94,-24.40,-0.02:99
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chr20 650795 rs6038527 T C 280.41 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=2;HaplotypeScore=3.34;MQ=59.29;MQ0=0;OQ=706.37;QD=10.87;SB=-376.01 GT:DP:GL:GQ 0/1:63:-92.91,-18.99,-136.88:99
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chr20 650847 rs11908241 T C 523.22 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=1.44;MQ=58.42;MQ0=0;OQ=1987.61;QD=33.13;SB=-1020.72 GT:DP:GL:GQ 1/1:58:-202.37,-17.48,-0.03:99
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chr20 650848 rs60036278 G A 654.22 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.28;MQ=58.39;MQ0=0;OQ=936.46;QD=15.87;SB=-380.14 GT:DP:GL:GQ 0/1:56:-113.81,-16.88,-90.09:99
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chr20 650858 rs11905492 G T 496.96 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=2.59;MQ=58.02;MQ0=0;OQ=2089.08;QD=34.82;SB=-988.58 GT:DP:GL:GQ 1/1:58:-212.51,-17.47,-0.02:99
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chr20 650899 rs6085581 T C 334.44 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=2;HaplotypeScore=0.98;MQ=59.25;MQ0=0;OQ=2301.39;QD=35.96;SB=-780.97 GT:DP:GL:GQ 1/1:64:-233.75,-19.28,-0.02:99
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chr20 650921 rs6085582 C T 674.72 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.35;MQ0=0;OQ=2839.05;QD=39.99;SB=-1017.85 GT:DP:GL:GQ 1/1:70:-287.51,-21.08,-0.02:99
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chr20 651955 rs6117314 A G 508.60 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.65;MQ0=0;OQ=1827.95;QD=34.49;SB=-872.07 GT:DP:GL:GQ 1/1:52:-186.40,-15.66,-0.02:99
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chr20 652353 rs6077021 C T 375.42 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=2;HaplotypeScore=1.90;MQ=56.45;MQ0=0;OQ=1022.49;QD=17.04;SB=-339.34 GT:DP:GL:GQ 0/1:59:-123.30,-17.77,-108.29:99
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chr20 652443 . G A 450.81 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=56.33;MQ0=0;OQ=1291.81;QD=18.19;SB=-646.19 GT:DP:GL:GQ 0/1:67:-152.67,-20.21,-85.88:99
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chr20 652452 rs6077022 G A 698.53 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.59;MQ0=0;OQ=918.98;QD=11.78;SB=-451.46 GT:DP:GL:GQ 0/1:72:-116.89,-21.71,-133.74:99
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chr20 652519 rs6077023 G A 638.55 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.30;MQ0=0;OQ=1150.03;QD=17.42;SB=-555.12 GT:DP:GL:GQ 0/1:65:-137.88,-19.60,-96.31:99
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chr20 652559 rs55885386 A G 587.17 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=1.54;MQ=59.19;MQ0=0;OQ=598.04;QD=10.49;SB=-251.94 GT:DP:GL:GQ 0/1:52:-78.77,-15.68,-106.30:99
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chr20 652699 rs6054331 T C 676.19 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=1.70;MQ=59.34;MQ0=0;OQ=635.46;QD=10.09;SB=-311.08 GT:DP:GL:GQ 0/1:62:-85.52,-18.69,-136.66:99
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chr20 654407 rs6054335 T G 496.55 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=55.87;MQ0=0;OQ=744.36;QD=16.54;SB=-314.91 GT:DP:GL:GQ 0/1:43:-90.67,-12.95,-63.59:99
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chr20 654680 . G A 0 FDRtranche2.00to10.00+ AB=0.61;AC=1;AF=0.50;AN=2;DP=61;Dels=0.00;HRun=20;HaplotypeScore=14.17;MQ=41.84;MQ0=1;OQ=604.12;QD=7.75;SB=41.68 GT:DP:GL:GQ 0/1:61:-82.08,-18.39,-134.96:99
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chr20 654719 rs6085596 G A 474.49 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.00;MQ0=0;OQ=866.68;QD=20.16;SB=-452.48 GT:DP:GL:GQ 0/1:43:-102.92,-12.96,-52.48:99
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chr20 654759 rs6085597 A G 102.67 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=2;HaplotypeScore=7.29;MQ=56.64;MQ0=0;OQ=823.12;QD=16.14;SB=-390.31 GT:DP:GL:GQ 0/1:47:-99.75,-14.16,-75.86:99
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chr20 654810 . T C 361.62 PASS AB=0.51;AC=1;AF=0.50;AN=2;DP=44;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=57.79;MQ0=0;OQ=494.37;QD=10.52;SB=-155.31 GT:DP:GL:GQ 0/1:44:-65.99,-13.27,-93.50:99
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chr20 656180 . A C 0 FDRtranche2.00to10.00+ AB=0.75;AC=1;AF=0.50;AN=2;DP=19;Dels=0.00;HRun=0;HaplotypeScore=56.46;MQ=47.08;MQ0=0;OQ=81.13;QD=4.06;SB=-60.87 GT:DP:GL:GQ 0/1:19:-17.12,-5.72,-53.62:99
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chr20 656196 . A C 0.07 FDRtranche2.00to10.00+ AB=0.79;AC=1;AF=0.50;AN=2;DP=18;Dels=0.00;HRun=0;HaplotypeScore=36.30;MQ=54.56;MQ0=0;OQ=63.27;QD=3.33;SB=17.08 GT:DP:GL:GQ 0/1:18:-15.03,-5.42,-52.55:96.11
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chr20 656257 rs28612701 A C 51.58 PASS AB=0.30;AC=1;AF=0.50;AN=2;DB;DP=34;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.45;MQ0=0;OQ=713.79;QD=19.29;SB=-70.94 GT:DP:GL:GQ 0/1:34:-84.91,-10.24,-37.12:99
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chr20 656259 rs28478587 C A 81.88 PASS AB=0.27;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.45;MQ0=0;OQ=808.70;QD=21.86;SB=-173.67 GT:DP:GL:GQ 0/1:35:-94.69,-10.54,-30.35:99
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chr20 656418 rs6117334 A G 167.29 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;HRun=0;HaplotypeScore=0.97;MQ=62.81;MQ0=0;OQ=291.44;QD=19.43;SB=-132.69 GT:DP:GL:GQ 1/1:11:-32.75,-3.32,-0.02:33.04
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chr20 656570 rs6140029 C G 65.25 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=26;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=54.65;MQ0=0;OQ=520.90;QD=19.29;SB=-10.00 GT:DP:GL:GQ 0/1:26:-63.21,-7.83,-51.52:99
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chr20 656706 rs56411166 A C 15.86 PASS AC=2;AF=1.00;AN=2;DB;DP=7;Dels=0.00;HRun=1;HaplotypeScore=1.35;MQ=60.00;MQ0=0;OQ=177.20;QD=25.31;SB=-10.00 GT:DP:GL:GQ 1/1:7:-21.30,-2.11,-0.01:21.03
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chr20 656970 rs2422518 A G 18.07 LowQual AB=0.78;AC=1;AF=0.50;AN=2;DB;DP=9;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;QD=2.01;SB=-10.00 GT:DP:GL:GQ 0/1:9:-7.80,-2.71,-26.37:50.84
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chr20 656974 rs2422519 G C 296.19 PASS AB=0.64;AC=1;AF=0.50;AN=2;DB;DP=10;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=103.93;QD=9.45;SB=-10.00 GT:DP:GL:GQ 0/1:10:-16.70,-3.02,-22.06:99
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chr20 657015 . G A 39.92 PASS AB=0.43;AC=1;AF=0.50;AN=2;DP=14;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=60.00;MQ0=0;OQ=237.28;QD=16.95;SB=-47.55 GT:DP:GL:GQ 0/1:14:-31.24,-4.22,-17.38:99
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chr20 657132 rs6107835 T G 195.21 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=9;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=52.08;QD=4.73;SB=-10.00 GT:DP:GL:GQ 0/1:9:-11.20,-2.71,-19.18:84.92
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chr20 657323 rs6117337 C T 613.05 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=58.58;MQ0=0;OQ=600.71;QD=13.97;SB=-294.22 GT:DP:GL:GQ 0/1:41:-75.72,-12.36,-70.05:99
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chr20 657333 rs6117338 C T 280.84 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.00;HRun=3;HaplotypeScore=1.67;MQ=59.15;MQ0=0;OQ=572.69;QD=13.02;SB=-299.20 GT:DP:GL:GQ 0/1:40:-72.60,-12.05,-77.40:99
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chr20 657366 rs12624604 G C 491.83 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=39;Dels=0.00;HRun=0;HaplotypeScore=2.63;MQ=59.42;MQ0=0;OQ=542.32;QD=13.56;SB=-231.04 GT:DP:GL:GQ 0/1:39:-69.27,-11.75,-99.91:99
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chr20 657568 . G T 348.87 PASS AB=0.57;AC=1;AF=0.50;AN=2;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=59.65;MQ0=0;OQ=631.03;QD=11.69;SB=-234.37 GT:DP:GL:GQ 0/1:53:-82.35,-15.97,-103.63:99
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chr20 657689 rs6038545 A G 244.53 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=3;HaplotypeScore=3.88;MQ=59.19;MQ0=0;OQ=710.10;QD=12.46;SB=-242.89 GT:DP:GL:GQ 0/1:56:-91.16,-16.87,-125.90:99
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chr20 657972 rs6117340 C T 573.09 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=1;HaplotypeScore=2.57;MQ=58.67;MQ0=0;OQ=1298.41;QD=16.03;SB=-580.58 GT:DP:GL:GQ 0/1:77:-156.32,-23.20,-135.13:99
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chr20 658395 rs6107838 C T 595.48 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=58.68;MQ0=0;OQ=1380.94;QD=16.64;SB=-566.37 GT:DP:GL:GQ 0/1:80:-165.47,-24.10,-140.72:99
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chr20 658537 rs6117349 T C 9.60 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=1;HaplotypeScore=9.19;MQ=56.81;MQ0=0;OQ=458.90;QD=8.83;SB=-203.53 GT:DP:GL:GQ 0/1:48:-63.63,-14.46,-120.50:99
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chr20 660050 rs6140037 C T 543.36 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=93;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.00;MQ0=0;OQ=1510.60;QD=16.07;SB=-729.56 GT:DP:GL:GQ 0/1:93:-182.35,-28.01,-174.24:99
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chr20 660185 rs6054380 T C 546.56 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=2.95;MQ=59.47;MQ0=0;OQ=803.24;QD=10.17;SB=-275.25 GT:DP:GL:GQ 0/1:73:-105.61,-22.00,-162.13:99
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chr20 660802 rs55781505 C T 581.01 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.70;MQ0=0;OQ=907.10;QD=11.48;SB=-476.90 GT:DP:GL:GQ 0/1:79:-117.79,-23.80,-176.23:99
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chr20 660907 rs62192122 A T 668.61 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=1.54;MQ=60.00;MQ0=0;OQ=1021.46;QD=16.48;SB=-498.95 GT:DP:GL:GQ 0/1:61:-123.81,-18.38,-97.65:99
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chr20 661177 rs6077036 T C 618.83 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=1;HaplotypeScore=1.63;MQ=59.32;MQ0=0;OQ=932.51;QD=11.24;SB=-395.13 GT:DP:GL:GQ 0/1:80:-120.63,-24.09,-191.97:99
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chr20 662008 rs2317021 A G 545.48 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=602.69;QD=14.70;SB=-225.28 GT:DP:GL:GQ 0/1:41:-75.90,-12.35,-82.63:99
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chr20 662462 rs927067 A G 396.32 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=2;HaplotypeScore=0.87;MQ=59.44;MQ0=0;OQ=1404.12;QD=34.25;SB=-638.30 GT:DP:GL:GQ 1/1:40:-144.01,-12.05,-0.01:99
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chr20 663175 rs6133337 G T 663.30 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=2.69;MQ=59.68;MQ0=0;OQ=972.59;QD=13.32;SB=-385.77 GT:DP:GL:GQ 0/1:69:-121.33,-20.79,-113.28:99
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chr20 664199 rs2317022 A G 745.41 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1394.07;QD=16.60;SB=-461.59 GT:DP:GL:GQ 0/1:84:-168.00,-25.31,-150.25:99
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chr20 664233 rs2873339 A G 659.15 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=86;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1013.49;QD=11.52;SB=-501.89 GT:DP:GL:GQ 0/1:86:-130.56,-25.93,-180.72:99
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chr20 665088 rs6054423 A G 675.48 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=96;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=58.67;MQ0=0;OQ=1320.70;QD=13.48;SB=-459.13 GT:DP:GL:GQ 0/1:96:-164.27,-28.92,-200.75:99
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chr20 665569 rs6117372 A G 725.55 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.31;MQ0=0;OQ=934.99;QD=15.33;SB=-352.93 GT:DP:GL:GQ 0/1:61:-115.16,-18.37,-122.15:99
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chr20 665649 rs6117373 C T 774.78 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.32;MQ=58.67;MQ0=0;OQ=914.85;QD=13.07;SB=-382.09 GT:DP:GL:GQ 0/1:67:-114.95,-20.18,-136.45:99
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chr20 665818 rs6117374 T C 530.79 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1152.37;QD=28.11;SB=-248.77 GT:DP:GL:GQ 1/1:38:-118.86,-11.47,-0.04:99
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chr20 666703 rs6085645 C T 732.97 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.34;MQ0=0;OQ=2417.42;QD=38.37;SB=-1198.60 GT:DP:GL:GQ 1/1:61:-245.35,-18.38,-0.02:99
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chr20 666735 rs6054442 C A 124.43 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=5;HaplotypeScore=0.00;MQ=59.07;MQ0=0;OQ=2285.43;QD=35.16;SB=-1060.21 GT:DP:GL:GQ 1/1:64:-232.15,-19.28,-0.02:99
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chr20 667383 rs6107859 G T 722.31 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=59.14;MQ0=0;OQ=922.84;QD=14.20;SB=-439.10 GT:DP:GL:GQ 0/1:63:-114.54,-18.97,-115.07:99
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chr20 667740 rs2317023 T C 259.64 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=4;HaplotypeScore=0.93;MQ=58.37;MQ0=0;OQ=598.46;QD=12.21;SB=-295.34 GT:DP:GL:GQ 0/1:48:-77.59,-14.46,-104.63:99
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chr20 667854 rs1884639 T C 447.24 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=2;HaplotypeScore=2.62;MQ=59.15;MQ0=0;OQ=754.32;QD=15.39;SB=-361.99 GT:DP:GL:GQ 0/1:47:-92.87,-14.16,-84.14:99
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chr20 667883 rs1884640 C G 196.85 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=4;HaplotypeScore=0.92;MQ=59.28;MQ0=0;OQ=844.32;QD=16.24;SB=-417.34 GT:DP:GL:GQ 0/1:49:-102.51,-14.80,-94.66:99
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chr20 668916 rs2144930 G A 704.81 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=58.93;MQ0=0;OQ=957.14;QD=15.69;SB=-449.33 GT:DP:GL:GQ 0/1:57:-116.17,-17.17,-105.39:99
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chr20 669111 rs6085653 A G 432.17 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=1.15;MQ=60.00;MQ0=0;OQ=2039.23;QD=32.89;SB=-911.58 GT:DP:GL:GQ 1/1:62:-207.55,-18.69,-0.04:99
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chr20 670411 rs34135709 C T 530.20 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=58.82;MQ0=0;OQ=1033.97;QD=18.46;SB=-359.51 GT:DP:GL:GQ 0/1:54:-122.96,-16.28,-74.88:99
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chr20 670583 rs6140067 A T 2.12 PASS AB=0.35;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=7;HaplotypeScore=0.73;MQ=59.73;MQ0=0;OQ=1281.23;QD=18.57;SB=-629.83 GT:DP:GL:GQ 0/1:66:-151.30,-19.89,-88.14:99
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chr20 671806 rs62192127 T A 0.73 FDRtranche1.00to2.00 AB=0.84;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=34.29;MQ=49.79;MQ0=4;OQ=146.18;QD=2.56;SB=-60.31 GT:DP:GL:GQ 0/1:48:-32.36,-14.46,-146.04:99
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chr20 671808 rs11697693 T A 2.36 PASS AB=0.75;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=21.73;MQ=49.25;MQ0=3;OQ=313.87;QD=5.60;SB=-124.09 GT:DP:GL:GQ 0/1:49:-49.44,-14.77,-130.61:99
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chr20 673460 rs6054498 C A 438.76 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=1.94;MQ=58.99;MQ0=0;OQ=3042.04;QD=36.65;SB=-1352.29 GT:DP:GL:GQ 1/1:82:-307.80,-24.69,-0.02:99
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chr20 673991 rs6107866 G T 287.42 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=6.56;MQ=59.03;MQ0=0;OQ=1505.03;QD=17.50;SB=-686.48 GT:DP:GL:GQ 0/1:81:-178.19,-24.40,-110.56:99
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chr20 675331 rs6085673 A G 764.64 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1721.02;QD=30.73;SB=-848.50 GT:DP:GL:GQ 1/1:55:-175.74,-16.59,-0.05:99
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chr20 675476 rs60461885 C T 648.15 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=100.65;MQ0=0;OQ=1084.83;QD=16.69;SB=-556.03 GT:DP:GL:GQ 0/1:61:-130.16,-18.40,-86.68:99
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chr20 675893 rs6140079 T C 208.15 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.74;MQ0=0;OQ=2307.89;QD=31.19;SB=-1147.82 GT:DP:GL:GQ 1/1:72:-234.44,-21.72,-0.06:99
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chr20 676025 rs6516199 A T 412.50 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;HRun=1;HaplotypeScore=0.73;MQ=59.81;MQ0=0;OQ=3644.94;QD=36.82;SB=-1790.25 GT:DP:GL:GQ 1/1:95:-363.49,-28.61,-0.02:99
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chr20 676499 rs6054508 A C 717.70 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.49;MQ0=0;OQ=2675.29;QD=34.74;SB=-1320.96 GT:DP:GL:GQ 1/1:77:-271.14,-23.20,-0.03:99
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chr20 676856 rs8118216 G C 1676.56 Indel AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=2.47;MQ=56.70;MQ0=0;QD=38.99;SB=-568.49 GT:DP:GL:GQ 1/1:40:-171.26,-12.06,-0.02:99
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chr20 676911 rs28805987 G A 0 FDRtranche2.00to10.00+ AB=0.72;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=20;HaplotypeScore=4.82;MQ=49.99;MQ0=1;OQ=401.32;QD=4.84;SB=43.17 GT:DP:GL:GQ 0/1:65:-63.02,-19.60,-152.96:99
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chr20 677075 rs56194108 T C 433.26 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=91.44;MQ0=0;OQ=572.08;QD=9.08;SB=-275.40 GT:DP:GL:GQ 0/1:61:-78.87,-18.38,-154.07:99
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chr20 677420 rs4813804 G A 286.65 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=3;HaplotypeScore=1.77;MQ=59.10;MQ0=0;OQ=1316.02;QD=18.28;SB=-619.04 GT:DP:GL:GQ 0/1:72:-156.57,-21.69,-117.09:99
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chr20 677990 rs6117431 A G 690.17 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=59.70;MQ0=0;OQ=922.24;QD=14.64;SB=-328.27 GT:DP:GL:GQ 0/1:61:-113.88,-18.37,-123.77:99
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chr20 678190 rs62192130 C T 664.52 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.40;MQ0=1;OQ=799.53;QD=15.99;SB=-396.92 GT:DP:GL:GQ 0/1:48:-97.70,-14.47,-77.04:99
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chr20 678498 rs6054513 G C 546.82 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.50;MQ0=0;OQ=1985.09;QD=43.15;SB=-976.74 GT:DP:GL:GQ 1/1:46:-202.11,-13.86,-0.01:99
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chr20 678893 rs57596504 C T 676.71 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.06;MQ0=0;OQ=972.64;QD=13.14;SB=-442.39 GT:DP:GL:GQ 0/1:71:-121.94,-21.39,-138.47:99
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chr20 679005 rs13039346 A G 182.99 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=2;HaplotypeScore=5.59;MQ=59.41;MQ0=0;OQ=1022.62;QD=13.11;SB=-512.58 GT:DP:GL:GQ 0/1:75:-128.14,-22.60,-153.67:99
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chr20 679211 rs4815939 C A 702.57 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.74;MQ0=0;OQ=1174.50;QD=16.54;SB=-497.89 GT:DP:GL:GQ 0/1:70:-141.82,-21.08,-115.48:99
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chr20 679744 rs6140090 A G 623.44 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=2.10;MQ=58.74;MQ0=0;OQ=1039.70;QD=14.05;SB=-527.94 GT:DP:GL:GQ 0/1:72:-128.94,-21.69,-146.75:99
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chr20 679927 rs6107871 C T 220.71 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=2;HaplotypeScore=1.77;MQ=57.87;MQ0=0;OQ=890.27;QD=19.78;SB=-366.48 GT:DP:GL:GQ 0/1:44:-105.56,-13.25,-66.52:99
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chr20 680271 rs6140091 A T 631.81 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.25;MQ0=0;OQ=1117.05;QD=17.19;SB=-474.51 GT:DP:GL:GQ 0/1:65:-134.57,-19.58,-115.77:99
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chr20 680295 rs6140092 A G 597.47 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=896.45;QD=15.19;SB=-412.96 GT:DP:GL:GQ 0/1:59:-110.71,-17.78,-104.34:99
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chr20 680399 rs6133358 C T 547.74 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=56.93;MQ0=0;OQ=1156.12;QD=19.27;SB=-541.78 GT:DP:GL:GQ 0/1:56:-135.77,-16.87,-79.34:99
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chr20 680764 rs6140094 T C 364.67 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=60.00;MQ0=0;OQ=842.32;QD=10.53;SB=-235.85 GT:DP:GL:GQ 0/1:76:-110.43,-22.91,-164.86:99
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chr20 680879 . G T 335.42 PASS AB=0.63;AC=1;AF=0.50;AN=2;DP=79;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=59.77;MQ0=0;OQ=859.56;QD=10.61;SB=-373.69 GT:DP:GL:GQ 0/1:79:-113.03,-23.79,-175.49:99
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chr20 680944 rs6117445 C G 628.87 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=1.81;MQ=59.50;MQ0=0;OQ=986.89;QD=13.16;SB=-503.20 GT:DP:GL:GQ 0/1:71:-123.37,-21.40,-183.69:99
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chr20 681094 rs6054525 T C 527.31 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=2.75;MQ=59.61;MQ0=0;OQ=1756.57;QD=29.77;SB=-868.03 GT:DP:GL:GQ 1/1:56:-179.29,-16.89,-0.05:99
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chr20 681465 rs28629436 T C 581.77 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=1.61;MQ=54.27;MQ0=1;OQ=823.80;QD=14.20;SB=-383.00 GT:DP:GL:GQ 0/1:53:-101.64,-15.98,-90.47:99
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chr20 681741 . G A 0.09 FDRtranche2.00to10.00+ AB=0.89;AC=1;AF=0.50;AN=2;DP=79;Dels=0.02;HRun=3;HaplotypeScore=28.81;MQ=60.24;MQ0=4;OQ=55.69;QD=0.57;SB=56.74 GT:DP:GL:GQ 0/1:79:-32.05,-23.20,-246.15:88.53
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chr20 681756 . A G 77.07 PASS AB=0.43;AC=1;AF=0.50;AN=2;DP=78;Dels=0.00;HRun=1;HaplotypeScore=6.11;MQ=64.75;MQ0=4;OQ=1473.87;QD=14.89;SB=-602.36 GT:DP:GL:GQ 0/1:78:-174.17,-23.50,-114.16:99
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chr20 681757 . G A 1.03 FDRtranche1.00to2.00 AB=0.43;AC=1;AF=0.50;AN=2;DP=78;Dels=0.00;HRun=4;HaplotypeScore=5.95;MQ=64.75;MQ0=4;OQ=1725.90;QD=17.43;SB=-692.83 GT:DP:GL:GQ 0/1:78:-199.37,-23.50,-101.45:99
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chr20 681788 . A G 0.19 FDRtranche2.00to10.00+ AB=0.88;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=1;HaplotypeScore=14.53;MQ=78.01;MQ0=6;OQ=58.61;QD=0.61;SB=-20.17 GT:DP:GL:GQ 0/1:70:-30.23,-21.09,-246.34:91.45
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chr20 681792 . A G 291.92 Indel AB=0.74;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=1;HaplotypeScore=16.00;MQ=82.41;MQ0=6;QD=3.11;SB=-167.20 GT:DP:GL:GQ 0/1:70:-53.56,-21.09,-222.13:99
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chr20 681838 rs6107877 G C 434.02 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=2;HaplotypeScore=0.16;MQ=93.13;MQ0=5;OQ=1182.11;QD=15.16;SB=-390.68 GT:DP:GL:GQ 0/1:70:-142.62,-21.13,-138.66:99
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chr20 681963 rs6117457 T C 621.93 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=2.73;MQ=58.88;MQ0=0;OQ=849.04;QD=11.47;SB=-360.95 GT:DP:GL:GQ 0/1:67:-108.38,-20.20,-136.39:99
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chr20 682617 rs56210940 A G 635.18 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.88;MQ=59.77;MQ0=0;OQ=1200.18;QD=15.00;SB=-568.24 GT:DP:GL:GQ 0/1:80:-147.40,-24.10,-157.89:99
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chr20 682768 rs6077070 C G 166.13 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=4;HaplotypeScore=1.76;MQ=58.44;MQ0=0;OQ=1150.74;QD=17.44;SB=-506.24 GT:DP:GL:GQ 0/1:62:-137.06,-18.70,-123.69:99
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chr20 683197 rs56002734 A G 548.17 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=813.64;QD=15.35;SB=-335.12 GT:DP:GL:GQ 0/1:51:-100.02,-15.37,-86.75:99
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chr20 683802 . G T 399.40 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=68;Dels=0.00;HRun=1;HaplotypeScore=1.15;MQ=59.16;MQ0=0;OQ=931.07;QD=12.93;SB=-333.17 GT:DP:GL:GQ 0/1:68:-116.87,-20.48,-125.85:99
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chr20 683857 rs4815940 G C 722.88 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=100.76;MQ0=0;OQ=2716.38;QD=36.22;SB=-1310.97 GT:DP:GL:GQ 1/1:69:-275.28,-20.83,-0.06:99
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chr20 684225 rs4815941 G T 631.65 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=1.20;MQ=58.85;MQ0=0;OQ=2302.61;QD=34.89;SB=-1168.39 GT:DP:GL:GQ 1/1:64:-233.87,-19.28,-0.02:99
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chr20 684447 . A G 317.69 PASS AB=0.37;AC=1;AF=0.50;AN=2;DP=75;Dels=0.00;HRun=1;HaplotypeScore=1.77;MQ=59.76;MQ0=0;OQ=1461.81;QD=18.74;SB=-698.97 GT:DP:GL:GQ 0/1:75:-172.06,-22.59,-107.63:99
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chr20 684644 rs6140099 G A 689.63 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.60;MQ0=0;OQ=2255.52;QD=39.57;SB=-998.63 GT:DP:GL:GQ 1/1:57:-229.15,-17.17,-0.02:99
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chr20 685553 rs4815943 T C 577.28 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;HRun=0;HaplotypeScore=0.10;MQ=54.43;MQ0=0;OQ=947.43;QD=32.67;SB=-460.84 GT:DP:GL:GQ 1/1:27:-98.34,-8.13,-0.01:81.24
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chr20 687264 rs55984748 T G 642.60 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=57.49;MQ0=0;OQ=1040.36;QD=14.25;SB=-529.76 GT:DP:GL:GQ 0/1:72:-129.01,-21.69,-131.72:99
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chr20 687452 rs4815945 G A 770.82 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=58.91;MQ0=0;OQ=2420.26;QD=37.82;SB=-1094.46 GT:DP:GL:GQ 1/1:62:-245.64,-18.68,-0.02:99
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chr20 687518 rs6085702 C G 759.46 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=1.13;MQ=59.38;MQ0=0;OQ=1235.57;QD=16.70;SB=-630.40 GT:DP:GL:GQ 0/1:73:-148.84,-22.00,-168.70:99
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chr20 688833 rs1053018 G C 760.25 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=59.71;MQ0=0;OQ=1266.25;QD=15.83;SB=-374.12 GT:DP:GL:GQ 0/1:79:-153.71,-23.80,-191.43:99
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chr20 688919 rs2295431 G T 626.09 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=1866.85;QD=35.22;SB=-952.05 GT:DP:GL:GQ 1/1:51:-190.28,-15.36,-0.01:99
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chr20 689847 rs910857 A G 566.99 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=24;Dels=0.00;HRun=0;HaplotypeScore=2.38;MQ=55.10;MQ0=0;OQ=358.01;QD=12.79;SB=-156.34 GT:DP:GL:GQ 0/1:24:-46.32,-7.23,-44.12:99
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chr20 690217 rs3746800 C G 322.80 PASS AB=0.27;AC=1;AF=0.50;AN=2;DB;DP=30;Dels=0.00;HRun=0;HaplotypeScore=1.42;MQ=55.51;MQ0=0;OQ=675.90;QD=20.48;SB=-327.04 GT:DP:GL:GQ 0/1:30:-79.93,-9.06,-39.23:99
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chr20 690237 rs3746801 G A 378.09 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;HRun=0;HaplotypeScore=1.79;MQ=55.90;MQ0=0;OQ=1033.80;QD=28.72;SB=-436.31 GT:DP:GL:GQ 1/1:28:-106.98,-8.44,-0.02:84.25
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chr20 690239 rs6054589 T C 96.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=3;HaplotypeScore=1.79;MQ=56.12;MQ0=0;OQ=1119.45;QD=29.46;SB=-499.17 GT:DP:GL:GQ 1/1:34:-115.55,-10.25,-0.02:99
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chr20 690631 rs873970 A G 329.44 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.04;MQ0=0;OQ=527.77;QD=10.56;SB=-256.34 GT:DP:GL:GQ 0/1:43:-69.02,-12.96,-88.55:99
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chr20 690831 rs6054593 G T 333.19 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=5.83;MQ=58.91;MQ0=0;OQ=669.38;QD=11.16;SB=-226.22 GT:DP:GL:GQ 0/1:55:-86.80,-16.57,-101.25:99
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chr20 691018 rs6038642 G T 720.84 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.57;MQ0=0;OQ=1973.68;QD=36.55;SB=-959.05 GT:DP:GL:GQ 1/1:54:-200.97,-16.26,-0.01:99
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chr20 691124 rs13039544 C G 548.29 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.81;MQ0=0;OQ=925.33;QD=18.14;SB=-394.00 GT:DP:GL:GQ 0/1:50:-110.88,-15.07,-104.08:99
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chr20 691130 rs6038643 C T 304.61 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=2;HaplotypeScore=0.99;MQ=58.83;MQ0=0;OQ=845.24;QD=16.25;SB=-343.33 GT:DP:GL:GQ 0/1:51:-103.17,-15.36,-96.14:99
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chr20 691220 rs2317024 T C 684.38 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=1;HaplotypeScore=0.97;MQ=59.48;MQ0=0;OQ=1103.65;QD=13.80;SB=-550.54 GT:DP:GL:GQ 0/1:78:-137.14,-23.49,-167.17:99
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chr20 691272 rs2317025 C T 569.01 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=0;HaplotypeScore=3.17;MQ=58.57;MQ0=0;OQ=1146.35;QD=13.03;SB=-301.76 GT:DP:GL:GQ 0/1:88:-144.43,-26.51,-182.24:99
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chr20 691827 rs910858 G A 594.29 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=1.89;MQ=59.67;MQ0=0;OQ=2042.84;QD=36.48;SB=-874.68 GT:DP:GL:GQ 1/1:53:-207.89,-15.97,-0.02:99
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chr20 692050 rs8122335 A G 784.10 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=769.66;QD=15.09;SB=-398.22 GT:DP:GL:GQ 0/1:51:-95.62,-15.37,-93.26:99
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chr20 692450 rs3746805 G A 445.31 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=1;HaplotypeScore=1.44;MQ=59.51;MQ0=0;OQ=1784.93;QD=37.98;SB=-875.03 GT:DP:GL:GQ 1/1:46:-182.10,-13.86,-0.02:99
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chr20 692847 rs6133374 A G 518.37 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=3.39;MQ=56.36;MQ0=0;OQ=2065.18;QD=32.27;SB=-974.94 GT:DP:GL:GQ 1/1:60:-210.13,-18.07,-0.02:99
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chr20 692874 rs6140117 G A 475.93 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=55.76;MQ0=0;OQ=2088.09;QD=38.67;SB=-974.37 GT:DP:GL:GQ 1/1:53:-212.41,-15.97,-0.02:99
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chr20 693086 . A G 12.85 PASS AB=0.68;AC=1;AF=0.50;AN=2;DP=64;Dels=0.00;HRun=2;HaplotypeScore=0.92;MQ=59.78;MQ0=0;OQ=441.70;QD=6.69;SB=-230.42 GT:DP:GL:GQ 0/1:64:-66.73,-19.28,-182.82:99
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chr20 693181 rs6077095 A T 377.23 PASS AB=0.22;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.07;MQ0=0;OQ=1810.40;QD=25.14;SB=-738.37 GT:DP:GL:GQ 0/1:67:-204.50,-20.18,-46.02:99
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chr20 694098 rs3746808 G A 75.31 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=2;HaplotypeScore=6.52;MQ=59.07;MQ0=0;OQ=798.05;QD=17.73;SB=-317.82 GT:DP:GL:GQ 0/1:44:-96.34,-13.25,-73.55:99
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chr20 694860 rs2024894 G T 523.16 Indel AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=144.48;MQ0=0;QD=11.63;SB=-281.64 GT:DP:GL:GQ 0/1:43:-68.55,-12.95,-84.01:99
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chr20 694885 rs2024895 T G 692.61 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=1;HaplotypeScore=0.26;MQ=108.09;MQ0=0;OQ=1982.51;QD=34.78;SB=-795.07 GT:DP:GL:GQ 1/1:57:-201.86,-17.17,-0.02:99
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chr20 694952 rs2024896 G A 665.88 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=64.09;MQ0=0;OQ=2866.94;QD=38.74;SB=-871.02 GT:DP:GL:GQ 1/1:73:-290.30,-21.99,-0.02:99
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chr20 695156 rs2180464 C A 404.98 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=3.58;MQ=53.25;MQ0=0;OQ=749.06;QD=14.98;SB=-344.37 GT:DP:GL:GQ 0/1:49:-92.95,-14.76,-78.17:99
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chr20 695220 rs6085770 T C 108.30 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=4;HaplotypeScore=1.47;MQ=50.94;MQ0=0;OQ=1674.56;QD=34.17;SB=-792.04 GT:DP:GL:GQ 1/1:49:-171.06,-14.76,-0.02:99
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chr20 695667 rs55689839 G A 560.94 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=1.86;MQ=65.49;MQ0=0;OQ=855.33;QD=14.02;SB=-391.16 GT:DP:GL:GQ 0/1:58:-106.29,-17.48,-104.76:99
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chr20 695835 rs6054627 A G 777.07 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.30;MQ0=0;OQ=3198.17;QD=35.93;SB=-1542.31 GT:DP:GL:GQ 1/1:89:-323.43,-26.81,-0.03:99
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chr20 695993 rs6085776 C T 372.02 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=6.01;MQ=57.65;MQ0=0;OQ=1123.80;QD=15.19;SB=-456.39 GT:DP:GL:GQ 0/1:72:-137.35,-21.69,-136.64:99
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chr20 696020 rs12480298 T A 320.90 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=4.29;MQ=57.75;MQ0=0;OQ=2392.40;QD=34.67;SB=-1057.90 GT:DP:GL:GQ 1/1:64:-242.85,-19.28,-0.02:99
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chr20 696610 rs12480365 T C 651.31 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=2.03;MQ=59.68;MQ0=0;OQ=1054.09;QD=18.17;SB=-422.25 GT:DP:GL:GQ 0/1:57:-125.87,-17.17,-86.43:99
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chr20 696911 rs1884636 A G 533.93 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=1.61;MQ=59.72;MQ0=0;OQ=1003.07;QD=12.09;SB=-455.21 GT:DP:GL:GQ 0/1:82:-128.30,-24.70,-184.00:99
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chr20 696974 rs1884637 T C 708.70 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.67;MQ0=0;OQ=2388.28;QD=34.12;SB=-1021.90 GT:DP:GL:GQ 1/1:67:-242.43,-20.18,-0.02:99
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chr20 698316 rs56138654 G A 65.52 PASS AB=0.35;AC=1;AF=0.50;AN=2;DB;DP=39;Dels=0.00;HRun=0;HaplotypeScore=6.48;MQ=57.70;MQ0=0;OQ=995.63;QD=20.32;SB=-451.98 GT:DP:GL:GQ 0/1:39:-114.60,-11.75,-35.00:99
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chr20 698548 . A C 351.19 PASS AB=0.60;AC=1;AF=0.50;AN=2;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=58.91;MQ0=0;OQ=587.10;QD=9.79;SB=-174.26 GT:DP:GL:GQ 0/1:59:-79.77,-17.77,-125.71:99
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chr20 698738 rs6117544 A G 760.36 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1800.65;QD=30.52;SB=-877.47 GT:DP:GL:GQ 1/1:57:-183.71,-17.19,-0.06:99
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chr20 698814 . C T 0 FDRtranche2.00to10.00+ AB=0.84;AC=1;AF=0.50;AN=2;DP=43;Dels=0.00;HRun=14;HaplotypeScore=15.38;MQ=56.76;MQ0=0;OQ=70.72;QD=1.24;SB=50.17 GT:DP:GL:GQ 0/1:43:-23.33,-12.97,-118.73:99
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chr20 699671 rs55979979 T A 630.05 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.49;MQ0=0;OQ=1249.40;QD=17.12;SB=-437.54 GT:DP:GL:GQ 0/1:71:-149.61,-21.38,-124.19:99
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chr20 700368 rs539934 A G 819.29 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=69.25;MQ0=0;OQ=2407.20;QD=33.43;SB=-1168.50 GT:DP:GL:GQ 1/1:69:-244.34,-20.79,-0.03:99
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chr20 700633 rs4815961 T G 726.80 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.46;MQ0=0;OQ=2720.29;QD=35.33;SB=-1140.14 GT:DP:GL:GQ 1/1:76:-275.64,-22.89,-0.02:99
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chr20 701243 rs6054669 T G 73.62 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=5.73;MQ=110.47;MQ0=0;OQ=2002.96;QD=31.30;SB=-855.05 GT:DP:GL:GQ 1/1:59:-203.90,-17.77,-0.02:99
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chr20 701363 rs570153 T G 540.04 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=1.13;MQ=59.48;MQ0=0;OQ=2406.06;QD=33.42;SB=-1175.00 GT:DP:GL:GQ 1/1:70:-244.22,-21.09,-0.03:99
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chr20 701468 rs657499 C A 490.18 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=59.11;MQ0=0;OQ=1936.41;QD=35.86;SB=-810.86 GT:DP:GL:GQ 1/1:53:-197.24,-15.96,-0.01:99
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chr20 701487 rs657812 T C 610.16 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=59.31;MQ0=0;OQ=1237.09;QD=29.45;SB=-515.20 GT:DP:GL:GQ 1/1:40:-127.33,-12.07,-0.04:99
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chr20 701516 rs571847 A G 511.77 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=1;HaplotypeScore=1.87;MQ=58.75;MQ0=0;OQ=453.42;QD=10.80;SB=-137.67 GT:DP:GL:GQ 0/1:38:-60.08,-11.45,-81.39:99
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chr20 701739 rs668988 G A 666.55 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1087.45;QD=16.73;SB=-333.39 GT:DP:GL:GQ 0/1:61:-130.40,-18.37,-106.57:99
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chr20 702367 rs671641 C G 166.99 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=1.52;MQ=59.55;MQ0=0;OQ=2137.72;QD=41.92;SB=-688.82 GT:DP:GL:GQ 1/1:51:-217.38,-15.37,-0.02:99
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chr20 702381 rs6054685 A G 604.69 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=1739.72;QD=35.50;SB=-572.39 GT:DP:GL:GQ 1/1:49:-177.57,-14.76,-0.01:99
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chr20 702803 . G A 206.98 PASS AB=0.39;AC=1;AF=0.50;AN=2;DP=54;Dels=0.00;HRun=0;HaplotypeScore=2.23;MQ=59.14;MQ0=0;OQ=1090.35;QD=20.19;SB=-409.46 GT:DP:GL:GQ 0/1:54:-128.61,-16.29,-63.27:99
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chr20 702915 . G C 16.54 DPFilter;LowQual AB=0.90;AC=1;AF=0.50;AN=2;DP=39;Dels=0.00;HRun=2;HaplotypeScore=39.76;MQ=59.51;MQ0=0;QD=0.42;SB=77.29 GT:DP:GL:GQ 0/1:39:-16.69,-11.76,-153.26:49.28
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chr20 703027 rs16993103 T C 489.17 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=1;HaplotypeScore=3.06;MQ=72.74;MQ0=0;OQ=887.81;QD=12.50;SB=-465.55 GT:DP:GL:GQ 0/1:69:-112.85,-20.79,-150.28:99
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chr20 703217 . A G 1 FDRtranche1.00to2.00 AB=0.50;AC=1;AF=0.50;AN=2;DP=63;Dels=0.00;HRun=2;HaplotypeScore=10.61;MQ=59.38;MQ0=0;OQ=916.59;QD=14.32;SB=-465.19 GT:DP:GL:GQ 0/1:63:-113.92,-18.98,-129.22:99
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chr20 704074 rs592249 G A 636.44 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=1.37;MQ=59.25;MQ0=0;OQ=1568.25;QD=20.91;SB=-730.09 GT:DP:GL:GQ 0/1:72:-181.81,-21.70,-84.30:99
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chr20 704106 rs527448 T C 494.37 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=2.00;MQ=59.19;MQ0=0;OQ=2529.50;QD=33.73;SB=-1280.50 GT:DP:GL:GQ 1/1:73:-256.57,-21.99,-0.03:99
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chr20 704177 rs527655 T C 577.68 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.45;MQ0=0;OQ=1981.98;QD=33.03;SB=-887.04 GT:DP:GL:GQ 1/1:55:-201.80,-16.56,-0.01:99
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chr20 704182 rs527659 A G 179.06 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=2.49;MQ=57.09;MQ0=0;OQ=1755.79;QD=29.26;SB=-835.62 GT:DP:GL:GQ 1/1:55:-179.21,-16.59,-0.05:99
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chr20 704519 rs552232 A G 722.48 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=59.30;MQ0=0;OQ=1462.71;QD=29.85;SB=-728.92 GT:DP:GL:GQ 1/1:48:-149.91,-14.48,-0.05:99
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chr20 704531 rs6140159 A G 655.10 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=1;HaplotypeScore=0.94;MQ=59.26;MQ0=0;OQ=542.42;QD=11.79;SB=-263.97 GT:DP:GL:GQ 0/1:44:-70.78,-13.26,-94.23:99
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chr20 705491 rs35656450 A G 426.55 Indel AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=27;Dels=0.00;HRun=0;HaplotypeScore=2.49;MQ=56.64;MQ0=0;QD=14.22;SB=-147.94 GT:DP:GL:GQ 0/1:27:-54.08,-8.14,-42.87:99
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chr20 705498 rs805846 T C 994.19 Indel AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;HRun=0;HaplotypeScore=13.92;MQ=67.60;MQ0=0;QD=29.24;SB=-498.67 GT:DP:GL:GQ 1/1:31:-106.57,-9.34,-3.57:57.73
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chr20 705986 rs11699533 A G 625.46 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=76.06;MQ0=0;OQ=1482.91;QD=18.31;SB=-621.34 GT:DP:GL:GQ 0/1:80:-175.68,-24.10,-124.52:99
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chr20 706982 rs636042 G C 599.58 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=2098.17;QD=42.82;SB=-836.29 GT:DP:GL:GQ 1/1:49:-213.42,-14.77,-0.02:99
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chr20 707523 rs566374 A G 652.18 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.69;MQ0=0;OQ=1846.80;QD=30.28;SB=-908.57 GT:DP:GL:GQ 1/1:57:-188.31,-17.18,-0.04:99
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chr20 707851 rs650358 T C 747.75 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.69;MQ0=0;OQ=2642.63;QD=35.71;SB=-1162.11 GT:DP:GL:GQ 1/1:74:-267.87,-22.29,-0.03:99
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chr20 708447 rs56396339 T C 378.15 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=96;Dels=0.00;HRun=0;HaplotypeScore=3.74;MQ=59.17;MQ0=0;OQ=1171.79;QD=12.21;SB=-442.13 GT:DP:GL:GQ 0/1:96:-149.38,-28.92,-217.99:99
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chr20 708729 . G A 474 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=60.00;MQ0=0;OQ=1424.67;QD=17.59;SB=-603.09 GT:DP:GL:GQ 0/1:80:-169.86,-24.11,-123.45:99
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chr20 709786 rs6085867 G A 692.26 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.43;MQ0=0;OQ=2654.38;QD=40.84;SB=-1179.72 GT:DP:GL:GQ 1/1:65:-269.03,-19.58,-0.01:99
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chr20 710555 rs6054736 T C 631.04 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=56.19;MQ0=0;OQ=2802.22;QD=34.60;SB=-1382.49 GT:DP:GL:GQ 1/1:79:-283.83,-23.80,-0.03:99
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chr20 710696 rs6054737 T G 621.76 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.91;MQ0=0;OQ=2221.61;QD=35.26;SB=-1001.11 GT:DP:GL:GQ 1/1:63:-225.76,-18.97,-0.02:99
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chr20 710778 rs6054739 C T 570.26 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=53.92;MQ0=0;OQ=2317.03;QD=39.95;SB=-1001.83 GT:DP:GL:GQ 1/1:58:-235.30,-17.47,-0.01:99
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chr20 710977 rs6054740 G T 356.89 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=100.90;MQ0=0;OQ=2686.48;QD=36.30;SB=-1049.55 GT:DP:GL:GQ 1/1:73:-272.25,-21.98,-0.01:99
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chr20 711195 rs6085872 A G 735.99 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1746.22;QD=36.38;SB=-649.28 GT:DP:GL:GQ 1/1:48:-178.22,-14.46,-0.01:99
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chr20 711391 rs6085874 T C 279.24 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=1.98;MQ=59.71;MQ0=0;OQ=2146.50;QD=32.04;SB=-738.77 GT:DP:GL:GQ 1/1:66:-218.28,-19.90,-0.05:99
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chr20 711541 rs6085876 G A 252.79 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=3;HaplotypeScore=2.00;MQ=59.61;MQ0=0;OQ=2233.31;QD=37.85;SB=-1142.47 GT:DP:GL:GQ 1/1:59:-230.34,-21.14,-3.42:99
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chr20 711651 rs6085877 G A 583.46 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.48;MQ0=0;OQ=3216.16;QD=39.71;SB=-1565.73 GT:DP:GL:GQ 1/1:79:-325.21,-23.79,-0.01:99
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chr20 711831 rs6085878 G A 2661.01 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.21;MQ0=0;QD=39.13;SB=-996.84 GT:DP:GL:GQ 1/1:67:-269.70,-20.18,-0.02:99
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chr20 711837 rs6085879 C T 665.62 SnpCluster AB=0.67;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.12;MQ0=0;QD=10.09;SB=-225.50 GT:DP:GL:GQ 0/1:64:-89.14,-19.29,-136.58:99
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chr20 711838 rs6085880 A G 2145.37 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.16;MQ0=0;QD=32.02;SB=-889.03 GT:DP:GL:GQ 1/1:64:-218.16,-19.29,-0.04:99
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chr20 711968 rs6085881 C A 345.99 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=3;HaplotypeScore=1.74;MQ=60.00;MQ0=0;OQ=2836.30;QD=35.02;SB=-1343.93 GT:DP:GL:GQ 1/1:79:-287.24,-23.80,-0.02:99
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chr20 712067 rs6085882 T C 719.12 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.33;MQ0=0;OQ=2254.67;QD=36.37;SB=-894.02 GT:DP:GL:GQ 1/1:62:-229.07,-18.67,-0.02:99
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chr20 712090 rs6085883 A G 634.46 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.33;MQ0=0;OQ=878.25;QD=12.73;SB=-421.21 GT:DP:GL:GQ 0/1:69:-111.89,-20.78,-153.79:99
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chr20 712093 rs11696592 C T 586.21 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.36;MQ0=0;OQ=1364.82;QD=18.96;SB=-525.04 GT:DP:GL:GQ 0/1:72:-161.45,-21.68,-120.76:99
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chr20 712163 rs6085884 T C 714.28 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.94;MQ0=0;OQ=2964.68;QD=36.15;SB=-1427.26 GT:DP:GL:GQ 1/1:82:-300.08,-24.70,-0.02:99
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chr20 712382 rs6085887 A G 743.29 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2316.98;QD=35.11;SB=-1163.14 GT:DP:GL:GQ 1/1:66:-235.30,-19.88,-0.02:99
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chr20 712477 rs6085889 G A 729.11 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=53.19;MQ0=9;OQ=2828.94;QD=34.93;SB=-1275.68 GT:DP:GL:GQ 1/1:71:-286.50,-21.39,-0.02:99
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chr20 712580 rs6085890 G A 728.47 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.66;MQ0=0;OQ=2640.70;QD=39.41;SB=-1236.17 GT:DP:GL:GQ 1/1:66:-267.67,-19.88,-0.01:99
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chr20 712757 rs499007 G C 552.33 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=1.73;MQ=57.75;MQ0=0;OQ=1293.64;QD=19.90;SB=-552.62 GT:DP:GL:GQ 0/1:65:-152.23,-19.59,-126.86:99
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chr20 712832 rs6085892 A G 551.34 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.41;MQ=58.91;MQ0=0;OQ=2551.59;QD=33.14;SB=-1272.57 GT:DP:GL:GQ 1/1:72:-258.77,-21.69,-0.03:99
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chr20 712887 rs6038717 G A 691.93 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3322.81;QD=40.03;SB=-1553.73 GT:DP:GL:GQ 1/1:82:-331.28,-24.70,-0.03:99
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chr20 712888 rs6054751 C A 731.90 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3158.37;QD=37.60;SB=-1390.67 GT:DP:GL:GQ 1/1:84:-319.44,-25.30,-0.02:99
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chr20 712980 rs6038718 T C 488.03 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=43.60;MQ0=0;OQ=2061.76;QD=32.21;SB=-765.71 GT:DP:GL:GQ 1/1:63:-209.80,-18.99,-0.04:99
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chr20 712990 rs6117641 A G 506.69 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.31;MQ=41.57;MQ0=0;OQ=1970.44;QD=33.97;SB=-815.68 GT:DP:GL:GQ 1/1:56:-200.65,-16.87,-0.02:99
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chr20 713329 rs4815972 G T 658.12 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=54.50;MQ0=0;OQ=1254.64;QD=17.92;SB=-595.01 GT:DP:GL:GQ 0/1:69:-149.53,-20.79,-101.91:99
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chr20 713338 rs4815973 A T 627.30 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=55.36;MQ0=0;OQ=2745.52;QD=37.10;SB=-1323.00 GT:DP:GL:GQ 1/1:73:-278.16,-21.99,-0.02:99
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chr20 713464 rs4815974 A G 748.23 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2462.95;QD=36.22;SB=-1207.17 GT:DP:GL:GQ 1/1:68:-249.90,-20.48,-0.02:99
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chr20 713485 rs11698159 A G 636.94 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=906.99;QD=12.77;SB=-396.25 GT:DP:GL:GQ 0/1:71:-115.39,-21.40,-140.68:99
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chr20 713788 rs7264641 C T 271.64 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=2.84;MQ=60.00;MQ0=0;OQ=1322.71;QD=19.17;SB=-391.92 GT:DP:GL:GQ 0/1:68:-156.05,-20.50,-95.94:99
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chr20 713937 rs4815975 C A 529.57 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.87;MQ=58.57;MQ0=0;OQ=2170.07;QD=35.00;SB=-898.66 GT:DP:GL:GQ 1/1:61:-220.61,-18.37,-0.02:99
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chr20 713946 rs4815976 T G 368.93 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=2;HaplotypeScore=0.73;MQ=58.66;MQ0=0;OQ=2287.66;QD=34.66;SB=-1017.37 GT:DP:GL:GQ 1/1:65:-232.37,-19.58,-0.02:99
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chr20 714224 rs649470 A G 660.76 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.23;MQ0=0;OQ=1920.86;QD=32.01;SB=-685.91 GT:DP:GL:GQ 1/1:60:-195.72,-18.09,-0.05:99
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chr20 714290 rs6085895 G A 535.92 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=1.99;MQ=59.70;MQ0=0;OQ=1089.31;QD=17.29;SB=-507.01 GT:DP:GL:GQ 0/1:61:-130.60,-18.38,-95.04:99
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chr20 714336 rs6038722 T G 687.63 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.11;MQ0=0;OQ=2309.66;QD=31.64;SB=-888.78 GT:DP:GL:GQ 1/1:72:-234.61,-21.70,-0.06:99
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chr20 714446 rs6038723 T C 709.47 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=59.71;MQ0=0;OQ=2220.06;QD=34.69;SB=-845.00 GT:DP:GL:GQ 1/1:64:-225.62,-19.28,-0.03:99
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chr20 715720 rs676786 A G 752.12 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.47;MQ0=0;OQ=2150.05;QD=30.28;SB=-964.06 GT:DP:GL:GQ 1/1:69:-218.66,-20.82,-0.07:99
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chr20 716573 rs8125134 A T 499.37 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=2.21;MQ=59.32;MQ0=0;OQ=950.28;QD=12.67;SB=-437.50 GT:DP:GL:GQ 0/1:73:-120.30,-21.99,-159.52:99
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chr20 717074 rs546106 T C 653.46 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=1060.83;QD=15.60;SB=-540.07 GT:DP:GL:GQ 0/1:68:-129.85,-20.48,-132.60:99
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chr20 717588 rs6085912 T C 535.87 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=766.34;QD=9.95;SB=-378.20 GT:DP:GL:GQ 0/1:77:-103.11,-23.20,-190.20:99
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chr20 717670 rs6038734 T C 609.73 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=59.52;MQ0=0;OQ=831.74;QD=10.66;SB=-321.97 GT:DP:GL:GQ 0/1:75:-109.06,-22.60,-169.54:99
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chr20 718359 . G A 449.09 PASS AB=0.56;AC=1;AF=0.50;AN=2;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.43;MQ0=0;OQ=1064.04;QD=14.58;SB=-553.55 GT:DP:GL:GQ 0/1:72:-131.37,-21.69,-146.43:99
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chr20 718551 rs602328 C A 746.15 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=2385.32;QD=36.14;SB=-1059.21 GT:DP:GL:GQ 1/1:66:-242.14,-19.88,-0.02:99
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chr20 718862 rs630435 T C 615.19 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.24;MQ=59.22;MQ0=0;OQ=781.74;QD=13.25;SB=-244.30 GT:DP:GL:GQ 0/1:59:-99.24,-17.78,-117.78:99
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chr20 718895 rs630800 G A 499.83 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=2.27;MQ=58.09;MQ0=0;OQ=1025.13;QD=17.38;SB=-342.35 GT:DP:GL:GQ 0/1:56:-122.67,-16.87,-91.60:99
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chr20 718913 rs630810 C G 176.90 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=3.02;MQ=57.55;MQ0=0;OQ=1126.12;QD=20.11;SB=-309.97 GT:DP:GL:GQ 0/1:56:-132.78,-16.88,-109.82:99
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chr20 719269 rs632170 T G 360.41 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=2;HaplotypeScore=0.83;MQ=54.60;MQ0=0;OQ=793.10;QD=13.67;SB=-404.17 GT:DP:GL:GQ 0/1:56:-99.46,-16.87,-103.70:99
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chr20 719282 rs498249 C T 662.75 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=52.71;MQ0=0;OQ=1011.05;QD=17.43;SB=-492.50 GT:DP:GL:GQ 0/1:56:-121.26,-16.87,-94.12:99
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chr20 719876 rs645059 A G 657.59 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=1.79;MQ=59.72;MQ0=0;OQ=1529.06;QD=18.42;SB=-746.31 GT:DP:GL:GQ 0/1:82:-180.89,-24.70,-126.53:99
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chr20 720614 rs6085922 T C 618.60 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.56;MQ0=0;OQ=1845.04;QD=35.48;SB=-602.35 GT:DP:GL:GQ 1/1:52:-188.10,-15.66,-0.01:99
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chr20 720904 . T C 469.75 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=75;Dels=0.00;HRun=0;HaplotypeScore=1.83;MQ=59.25;MQ0=0;OQ=1187.08;QD=15.83;SB=-502.29 GT:DP:GL:GQ 0/1:75:-144.59,-22.59,-140.79:99
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chr20 721438 rs662567 T C 232.70 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=56.76;MQ0=1;OQ=2088.65;QD=31.65;SB=-915.03 GT:DP:GL:GQ 1/1:60:-212.47,-18.07,-0.02:99
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chr20 721509 rs662934 A G 1936.84 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=54.22;MQ0=0;QD=32.83;SB=-985.73 GT:DP:GL:GQ 1/1:55:-197.29,-16.57,-0.02:99
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chr20 721516 rs662951 T C 1815.37 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=3;HaplotypeScore=0.58;MQ=53.89;MQ0=0;QD=32.42;SB=-877.37 GT:DP:GL:GQ 1/1:51:-185.14,-15.36,-0.02:99
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chr20 721519 rs662958 A G 1742.36 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.26;MQ0=0;QD=31.11;SB=-746.81 GT:DP:GL:GQ 1/1:54:-177.86,-16.28,-0.04:99
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chr20 721546 rs663007 A G 712.83 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.04;MQ0=0;OQ=1922.07;QD=35.59;SB=-845.12 GT:DP:GL:GQ 1/1:54:-195.81,-16.26,-0.01:99
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chr20 722038 rs675533 A G 345.95 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=1.21;MQ=59.29;MQ0=0;OQ=2569.98;QD=28.24;SB=-1193.00 GT:DP:GL:GQ 1/1:83:-260.66,-25.03,-0.08:99
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chr20 722143 . C T 448.03 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=59.62;MQ0=0;OQ=848.56;QD=14.14;SB=-284.79 GT:DP:GL:GQ 0/1:59:-105.92,-17.78,-107.48:99
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chr20 722321 . C G 483.92 PASS AB=0.50;AC=1;AF=0.50;AN=2;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=59.52;MQ0=0;OQ=1188.75;QD=15.24;SB=-557.13 GT:DP:GL:GQ 0/1:74:-144.48,-22.32,-165.88:99
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chr20 722414 rs677305 T G 378.34 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=59.71;MQ0=0;OQ=1238.23;QD=15.48;SB=-495.33 GT:DP:GL:GQ 0/1:79:-150.91,-23.80,-125.41:99
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chr20 722968 rs4815982 T C 471.66 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=2;HaplotypeScore=0.83;MQ=59.67;MQ0=0;OQ=834.30;QD=14.90;SB=-427.94 GT:DP:GL:GQ 0/1:52:-102.38,-15.66,-92.98:99
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chr20 723087 rs582863 A G 404.19 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=3.11;MQ=59.17;MQ0=0;OQ=669.79;QD=9.85;SB=-244.46 GT:DP:GL:GQ 0/1:66:-90.14,-19.88,-166.55:99
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chr20 723376 rs530831 T G 261.64 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=2;HaplotypeScore=3.96;MQ=59.13;MQ0=0;OQ=477.17;QD=9.00;SB=-160.19 GT:DP:GL:GQ 0/1:49:-65.76,-14.76,-109.59:99
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chr20 724077 rs597486 C A 588.19 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.40;MQ=60.00;MQ0=0;OQ=1327.64;QD=19.82;SB=-649.81 GT:DP:GL:GQ 0/1:67:-156.23,-20.18,-79.25:99
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chr20 724448 . G A 169.56 PASS AB=0.48;AC=1;AF=0.50;AN=2;DP=93;Dels=0.00;HRun=0;HaplotypeScore=3.88;MQ=59.32;MQ0=0;OQ=1595.07;QD=16.79;SB=-655.34 GT:DP:GL:GQ 0/1:93:-190.82,-28.03,-149.63:99
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chr20 724868 rs611256 T G 590.99 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.30;MQ0=0;OQ=1279.67;QD=14.88;SB=-541.72 GT:DP:GL:GQ 0/1:83:-156.25,-25.00,-141.90:99
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chr20 724987 rs6054846 C A 587.34 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.63;MQ=48.71;MQ0=0;OQ=2179.42;QD=36.32;SB=-957.04 GT:DP:GL:GQ 1/1:59:-221.54,-17.77,-0.01:99
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chr20 725691 rs56323612 A G 679.23 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.42;MQ0=0;OQ=1065.81;QD=13.49;SB=-463.03 GT:DP:GL:GQ 0/1:78:-133.36,-23.50,-162.84:99
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chr20 726514 rs4813823 G A 187.70 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=0.80;MQ=59.69;MQ0=0;OQ=1323.55;QD=21.70;SB=-633.09 GT:DP:GL:GQ 0/1:61:-154.01,-18.37,-84.19:99
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chr20 726696 . T C 171.85 PASS AB=0.49;AC=1;AF=0.50;AN=2;DP=92;Dels=0.00;HRun=1;HaplotypeScore=4.34;MQ=59.75;MQ0=0;OQ=1431.11;QD=15.39;SB=-570.59 GT:DP:GL:GQ 0/1:92:-174.10,-27.71,-184.10:99
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chr20 726921 rs6038757 G A 516.31 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.75;MQ0=0;OQ=1595.53;QD=21.56;SB=-649.69 GT:DP:GL:GQ 0/1:73:-184.84,-22.00,-91.04:99
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chr20 727110 rs6054857 T C 505.63 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=96;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=1438.62;QD=14.83;SB=-725.24 GT:DP:GL:GQ 0/1:96:-176.08,-28.94,-168.58:99
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chr20 727122 rs6054858 C G 287.25 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=99;Dels=0.00;HRun=0;HaplotypeScore=1.12;MQ=59.62;MQ0=0;OQ=2131.12;QD=21.53;SB=-1011.55 GT:DP:GL:GQ 0/1:99:-246.22,-29.83,-184.06:99
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chr20 727237 rs6077171 T G 635.90 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.93;MQ=59.78;MQ0=0;OQ=1289.11;QD=15.17;SB=-635.74 GT:DP:GL:GQ 0/1:83:-157.19,-25.00,-141.95:99
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chr20 727943 rs1090564 C T 72.72 PASS AB=0.66;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=8.45;MQ=59.51;MQ0=1;OQ=619.42;QD=10.15;SB=-330.80 GT:DP:GL:GQ 0/1:55:-81.79,-16.57,-121.10:99
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chr20 728153 rs656947 A T 529.50 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=2.96;MQ=58.07;MQ0=0;OQ=850.62;QD=13.94;SB=-417.61 GT:DP:GL:GQ 0/1:60:-106.41,-18.07,-127.23:99
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chr20 728287 rs6117740 G A 674.04 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=1.16;MQ=55.85;MQ0=0;OQ=1127.57;QD=13.75;SB=-498.71 GT:DP:GL:GQ 0/1:79:-139.85,-23.81,-141.38:99
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chr20 729350 rs6140238 G A 679.44 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=57.86;MQ0=0;OQ=743.84;QD=14.03;SB=-377.88 GT:DP:GL:GQ 0/1:52:-93.34,-15.67,-93.93:99
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chr20 729461 rs6117749 T C 656.82 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.73;MQ0=0;OQ=925.18;QD=13.61;SB=-468.72 GT:DP:GL:GQ 0/1:65:-115.40,-19.60,-113.82:99
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chr20 730131 rs595095 T C 288.08 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=3.86;MQ=59.25;MQ0=0;OQ=722.24;QD=11.65;SB=-198.60 GT:DP:GL:GQ 0/1:61:-93.90,-18.39,-123.18:99
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chr20 730798 rs805868 C G 413.77 PASS AB=0.29;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.20;MQ0=0;OQ=1019.29;QD=24.27;SB=-478.85 GT:DP:GL:GQ 0/1:42:-117.88,-12.67,-52.92:99
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chr20 730974 rs609149 C T 637.62 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=926.61;QD=15.19;SB=-355.32 GT:DP:GL:GQ 0/1:59:-113.73,-17.78,-100.04:99
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chr20 731012 . G A 433.70 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=59.56;MQ0=0;OQ=988.35;QD=18.65;SB=-507.04 GT:DP:GL:GQ 0/1:50:-117.18,-15.06,-75.71:99
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chr20 731382 rs6038771 C T 36.09 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=5;HaplotypeScore=2.77;MQ=58.93;MQ0=0;OQ=769.51;QD=13.50;SB=-313.30 GT:DP:GL:GQ 0/1:54:-96.50,-16.27,-112.06:99
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chr20 731864 rs6077185 C T 451.87 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=2;HaplotypeScore=1.43;MQ=59.26;MQ0=0;OQ=3233.06;QD=39.43;SB=-1199.58 GT:DP:GL:GQ 1/1:81:-326.79,-24.41,-0.03:99
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chr20 732010 rs480880 C A 345.65 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.45;MQ0=0;OQ=2205.35;QD=35.01;SB=-1064.46 GT:DP:GL:GQ 1/1:61:-224.14,-18.37,-0.02:99
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chr20 732062 rs6077188 C T 689.82 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.24;MQ0=0;OQ=2595.92;QD=38.75;SB=-926.74 GT:DP:GL:GQ 1/1:65:-263.19,-19.58,-0.02:99
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chr20 732346 rs625715 T C 578.11 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=60.00;MQ0=0;OQ=1631.14;QD=30.78;SB=-802.67 GT:DP:GL:GQ 1/1:53:-166.75,-15.99,-0.05:99
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chr20 732403 rs11906520 C T 522.78 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1655.08;QD=39.41;SB=-601.97 GT:DP:GL:GQ 1/1:42:-169.11,-12.65,-0.01:99
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chr20 732730 rs11087768 G A 192.76 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=57.94;MQ0=0;OQ=3475.18;QD=39.94;SB=-1584.61 GT:DP:GL:GQ 1/1:86:-346.52,-25.91,-0.03:99
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chr20 732898 rs11087769 C T 681.93 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.77;MQ0=0;OQ=4021.65;QD=39.82;SB=-1860.99 GT:DP:GL:GQ 1/1:100:-401.16,-30.13,-0.03:99
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chr20 732958 rs10854267 C G 459.43 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=4650.86;QD=43.88;SB=-2221.72 GT:DP:GL:GQ 1/1:106:-464.09,-31.94,-0.03:99
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chr20 733024 rs12625396 C T 474.73 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.70;MQ0=0;OQ=3162.84;QD=40.55;SB=-1212.63 GT:DP:GL:GQ 1/1:78:-319.88,-23.49,-0.02:99
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chr20 733087 rs12624697 G A 387.38 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=1;HaplotypeScore=1.96;MQ=58.72;MQ0=0;OQ=3383.81;QD=40.28;SB=-1159.60 GT:DP:GL:GQ 1/1:84:-337.38,-28.44,-3.28:99
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chr20 733898 rs6086005 T C 739.38 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.55;MQ0=0;OQ=2283.81;QD=35.68;SB=-988.07 GT:DP:GL:GQ 1/1:63:-231.98,-18.97,-0.02:99
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chr20 733917 rs6086006 T C 785.65 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.25;MQ0=0;OQ=2233.12;QD=31.90;SB=-1135.81 GT:DP:GL:GQ 1/1:69:-226.95,-20.80,-0.05:99
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chr20 733999 rs541533 A G 768.85 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=2686.51;QD=31.98;SB=-1236.84 GT:DP:GL:GQ 1/1:84:-272.31,-25.33,-0.07:99
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chr20 734107 rs12481089 C G 623.64 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3439.82;QD=43.00;SB=-1648.63 GT:DP:GL:GQ 1/1:79:-342.98,-23.80,-0.03:99
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chr20 734455 rs1120554 C T 501.50 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=1.46;MQ=59.52;MQ0=0;OQ=3456.91;QD=39.73;SB=-1334.38 GT:DP:GL:GQ 1/1:85:-344.69,-25.60,-0.02:99
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chr20 734703 rs1120555 A G 689.20 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=88.34;MQ0=0;OQ=2796.68;QD=32.15;SB=-1150.15 GT:DP:GL:GQ 1/1:86:-283.31,-25.93,-0.06:99
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chr20 735059 rs572635 G T 441.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2543.17;QD=36.86;SB=-1203.34 GT:DP:GL:GQ 1/1:69:-257.92,-20.78,-0.01:99
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chr20 735341 rs2180465 A G 453.58 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2510.84;QD=35.87;SB=-1199.14 GT:DP:GL:GQ 1/1:70:-254.69,-21.08,-0.02:99
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chr20 735958 rs35700449 A G 462.21 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.66;MQ0=0;OQ=1329.69;QD=32.43;SB=-253.77 GT:DP:GL:GQ 1/1:37:-136.57,-11.15,-0.01:99
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chr20 736038 rs12479451 C T 223.15 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;HRun=0;HaplotypeScore=1.99;MQ=54.33;MQ0=1;OQ=934.24;QD=35.93;SB=-300.68 GT:DP:GL:GQ 1/1:24:-97.01,-7.23,-0.01:72.24
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chr20 736713 rs4434059 G A 690.45 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.54;MQ0=0;OQ=3195.78;QD=39.45;SB=-1574.39 GT:DP:GL:GQ 1/1:80:-323.18,-24.10,-0.02:99
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chr20 737129 rs6086014 C T 390.31 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.33;MQ0=0;OQ=3157.14;QD=37.58;SB=-864.64 GT:DP:GL:GQ 1/1:80:-319.32,-24.10,-0.02:99
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chr20 737390 rs6086016 T C 761.60 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.19;MQ0=0;OQ=1843.95;QD=33.53;SB=-652.32 GT:DP:GL:GQ 1/1:53:-188.00,-15.96,-0.02:99
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chr20 737616 rs603413 G A 501.05 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;HRun=1;HaplotypeScore=0.67;MQ=59.79;MQ0=0;OQ=3594.18;QD=40.84;SB=-1663.24 GT:DP:GL:GQ 1/1:88:-358.42,-26.51,-0.02:99
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chr20 738035 rs605236 C T 185.34 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=1;HaplotypeScore=4.23;MQ=59.67;MQ0=0;OQ=2753.88;QD=39.34;SB=-1273.69 GT:DP:GL:GQ 1/1:69:-278.99,-20.78,-0.02:99
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chr20 738092 rs6086019 C A 535.25 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=1.36;MQ=60.00;MQ0=0;OQ=2754.17;QD=35.31;SB=-1067.48 GT:DP:GL:GQ 1/1:76:-279.02,-22.89,-0.02:99
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chr20 738119 rs2224270 C T 800.80 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=2743.77;QD=39.76;SB=-1060.33 GT:DP:GL:GQ 1/1:68:-277.98,-20.48,-0.02:99
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chr20 738418 . T G 460.81 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.16;MQ=59.71;MQ0=0;OQ=1000.08;QD=12.50;SB=-297.71 GT:DP:GL:GQ 0/1:80:-127.39,-24.10,-157.01:99
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chr20 738722 rs491221 C T 452.57 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2451.48;QD=38.91;SB=-1185.61 GT:DP:GL:GQ 1/1:61:-248.75,-18.37,-0.01:99
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chr20 739208 rs495742 A T 841.64 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=2083.28;QD=34.72;SB=-1029.55 GT:DP:GL:GQ 1/1:57:-211.94,-17.17,-0.02:99
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chr20 739302 rs637589 T C 741.52 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.69;MQ0=0;OQ=2276.10;QD=30.35;SB=-846.35 GT:DP:GL:GQ 1/1:72:-231.26,-21.72,-0.06:99
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chr20 739957 rs650759 A C 726.79 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.34;MQ0=0;OQ=2128.84;QD=33.79;SB=-564.54 GT:DP:GL:GQ 1/1:62:-216.49,-18.67,-0.02:99
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chr20 740230 rs7266858 G A 471.46 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=59.28;MQ0=0;OQ=1157.59;QD=36.17;SB=-368.47 GT:DP:GL:GQ 1/1:31:-119.36,-9.35,-0.02:93.28
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chr20 741135 rs12479843 A C 262.10 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=3;HaplotypeScore=1.24;MQ=58.98;MQ0=0;OQ=2843.38;QD=34.68;SB=-1378.05 GT:DP:GL:GQ 1/1:80:-287.94,-24.09,-0.02:99
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chr20 742216 rs12624549 C T 694.07 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2262.47;QD=39.01;SB=-963.30 GT:DP:GL:GQ 1/1:57:-229.85,-17.17,-0.01:99
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chr20 742506 rs500066 G A 775.87 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.32;MQ0=0;OQ=2109.14;QD=38.35;SB=-849.63 GT:DP:GL:GQ 1/1:53:-214.51,-15.97,-0.01:99
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chr20 744030 rs11698649 A T 370.93 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=3.51;MQ=59.54;MQ0=0;OQ=1663.09;QD=33.26;SB=-697.73 GT:DP:GL:GQ 1/1:48:-172.51,-16.58,-2.62:99
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chr20 744432 rs6077209 C A 518.92 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=2.20;MQ=59.36;MQ0=0;OQ=2477.36;QD=34.41;SB=-1083.29 GT:DP:GL:GQ 1/1:70:-251.35,-21.09,-0.03:99
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chr20 746155 . A G 383.89 PASS AB=0.46;AC=1;AF=0.50;AN=2;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.82;MQ0=0;OQ=1073.26;QD=15.55;SB=-291.65 GT:DP:GL:GQ 0/1:68:-131.09,-20.48,-130.68:99
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chr20 746333 rs56021320 G T 397.29 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.85;MQ0=0;OQ=1039.78;QD=33.54;SB=-180.93 GT:DP:GL:GQ 1/1:29:-107.57,-8.73,-0.01:87.27
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chr20 746451 . T C 284.37 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;HRun=0;HaplotypeScore=2.05;MQ=57.70;MQ0=0;OQ=1642.69;QD=32.21;SB=-627.87 GT:DP:GL:GQ 1/1:49:-167.89,-14.77,-0.03:99
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chr20 746452 . T A 308.51 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;HRun=0;HaplotypeScore=2.05;MQ=57.70;MQ0=0;OQ=1746.98;QD=34.25;SB=-741.57 GT:DP:GL:GQ 1/1:49:-178.31,-14.77,-0.02:99
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chr20 746755 rs645843 T C 818.18 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.06;MQ0=0;OQ=1844.73;QD=33.54;SB=-884.69 GT:DP:GL:GQ 1/1:53:-188.08,-15.97,-0.02:99
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chr20 747534 rs35963124 A G 366.82 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=1.10;MQ=56.70;MQ0=2;OQ=1290.73;QD=26.89;SB=-571.97 GT:DP:GL:GQ 1/1:42:-132.70,-12.67,-0.04:99
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chr20 747613 rs57322792 G C 534.46 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=48.29;MQ0=0;OQ=1095.16;QD=37.76;SB=-549.05 GT:DP:GL:GQ 1/1:27:-113.11,-8.14,-0.01:81.27
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chr20 747892 . T C 0.23 FDRtranche2.00to10.00+ AB=0.52;AC=1;AF=0.50;AN=2;DP=11;Dels=0.00;HRun=5;HaplotypeScore=12.01;MQ=43.07;MQ0=0;OQ=145.26;QD=6.92;SB=-73.35 GT:DP:GL:GQ 0/1:11:-21.12,-3.31,-18.74:99
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chr20 747916 . T C 3.02 PASS AB=0.74;AC=1;AF=0.50;AN=2;DP=15;Dels=0.00;HRun=1;HaplotypeScore=5.58;MQ=38.18;MQ0=0;OQ=101.81;QD=5.36;SB=-10.00 GT:DP:GL:GQ 0/1:15:-17.99,-4.53,-34.07:99
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chr20 747922 . C T 36.01 Indel;LowQual AB=0.74;AC=1;AF=0.50;AN=2;DP=15;Dels=0.00;HRun=0;HaplotypeScore=8.39;MQ=38.18;MQ0=0;QD=1.90;SB=-10.00 GT:DP:GL:GQ 0/1:15:-11.40,-4.52,-45.56:68.84
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chr20 747938 rs56306403 C T 20.44 Indel;LowQual AB=0.73;AC=1;AF=0.50;AN=2;DB;DP=10;Dels=0.00;HRun=0;HaplotypeScore=4.73;MQ=32.14;MQ0=0;QD=1.86;SB=-10.00 GT:DP:GL:GQ 0/1:10:-8.34,-3.01,-30.37:53.24
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chr20 747983 . G C 0.20 FDRtranche2.00to10.00+ AC=2;AF=1.00;AN=2;DP=4;Dels=0.20;HRun=0;HaplotypeScore=5.97;MQ=29.00;MQ0=0;OQ=146.35;QD=29.27;SB=-10.00 GT:DP:GL:GQ 1/1:4:-18.17,-1.21,-0.00:12.04
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chr20 748056 . G C 38.94 PASS AB=0.73;AC=1;AF=0.50;AN=2;DP=14;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=53.07;MQ0=0;OQ=64.79;QD=4.32;SB=23.11 GT:DP:GL:GQ 0/1:14:-13.98,-4.22,-50.12:97.62
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chr20 749160 rs28655648 T C 41.90 ABFilter;DPFilter;Indel;LowQual AB=0.89;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.89;MQ=45.78;MQ0=0;QD=0.57;SB=44.58 GT:DP:GL:GQ 0/1:70:-28.57,-21.10,-236.95:74.74
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chr20 750123 rs600810 G T 693.89 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=59.44;MQ0=0;OQ=2596.42;QD=35.09;SB=-1248.48 GT:DP:GL:GQ 1/1:74:-263.26,-22.29,-0.03:99
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chr20 751752 rs628573 T C 40.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=3;HaplotypeScore=2.99;MQ=59.45;MQ0=0;OQ=1100.81;QD=26.21;SB=-414.36 GT:DP:GL:GQ 1/1:34:-113.69,-10.25,-0.02:99
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chr20 753097 rs577491 A G 374.54 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=2.74;MQ=58.57;MQ0=0;OQ=1993.64;QD=28.08;SB=-911.40 GT:DP:GL:GQ 1/1:64:-203.01,-19.31,-0.06:99
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chr20 754471 rs661226 G C 621.38 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.68;MQ0=0;OQ=2173.41;QD=37.47;SB=-1105.83 GT:DP:GL:GQ 1/1:57:-223.31,-19.43,-2.39:99
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chr20 754677 rs672385 T C 667.26 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.73;MQ=59.68;MQ0=0;OQ=2506.87;QD=34.34;SB=-1051.41 GT:DP:GL:GQ 1/1:70:-254.30,-21.09,-0.03:99
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chr20 754878 rs673261 C T 683.76 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.63;MQ0=0;OQ=1972.65;QD=38.68;SB=-660.68 GT:DP:GL:GQ 1/1:50:-200.86,-15.06,-0.01:99
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chr20 756430 rs805881 G A 736.42 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=54.66;MQ0=0;OQ=2010.71;QD=37.24;SB=-1025.86 GT:DP:GL:GQ 1/1:50:-204.67,-15.06,-0.01:99
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chr20 756602 rs36137787 G A 634.84 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.35;MQ0=0;OQ=2252.34;QD=37.54;SB=-1137.51 GT:DP:GL:GQ 1/1:56:-228.83,-16.87,-0.01:99
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chr20 756703 rs8184824 G A 540.58 Indel AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=16;HaplotypeScore=28.91;MQ=55.92;MQ0=0;QD=7.72;SB=-68.36 GT:DP:GL:GQ 0/1:59:-75.13,-17.78,-140.95:99
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chr20 756720 . G A 0 FDRtranche2.00to10.00+ AB=0.78;AC=1;AF=0.50;AN=2;DP=42;Dels=0.00;HRun=16;HaplotypeScore=10.56;MQ=56.67;MQ0=0;OQ=72.83;QD=1.21;SB=71.19 GT:DP:GL:GQ 0/1:42:-23.22,-12.65,-123.52:99
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chr20 757368 rs535376 G A 500.52 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.55;MQ0=0;OQ=1990.26;QD=39.02;SB=-733.37 GT:DP:GL:GQ 1/1:49:-202.62,-14.76,-0.01:99
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chr20 757499 rs6117857 C T 621.01 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2673.72;QD=39.32;SB=-1317.24 GT:DP:GL:GQ 1/1:68:-270.98,-20.49,-0.02:99
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chr20 757500 rs6038882 A G 735.71 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2402.62;QD=34.82;SB=-1215.81 GT:DP:GL:GQ 1/1:68:-243.87,-20.48,-0.02:99
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chr20 757589 rs608938 C T 302 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=3.19;MQ=59.46;MQ0=0;OQ=3394.17;QD=39.47;SB=-1554.59 GT:DP:GL:GQ 1/1:83:-338.42,-25.00,-0.02:99
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chr20 757930 . C T 522.97 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3094.22;QD=40.18;SB=-1530.01 GT:DP:GL:GQ 1/1:77:-313.03,-23.20,-0.02:99
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chr20 758707 rs805883 A G 724.55 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.23;MQ0=0;OQ=2213.40;QD=29.91;SB=-1086.09 GT:DP:GL:GQ 1/1:70:-224.99,-21.11,-0.07:99
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chr20 758954 rs571126 A G 545.83 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1047.11;QD=30.80;SB=-405.33 GT:DP:GL:GQ 1/1:33:-108.32,-9.95,-0.02:99
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chr20 759430 rs805886 A G 141.26 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=4;HaplotypeScore=1.11;MQ=56.86;MQ0=0;OQ=2174.31;QD=33.97;SB=-864.64 GT:DP:GL:GQ 1/1:62:-221.04,-18.68,-0.03:99
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chr20 759507 rs486484 G A 372.35 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.82;MQ0=0;OQ=1564.17;QD=38.15;SB=-318.30 GT:DP:GL:GQ 1/1:40:-160.02,-12.05,-0.01:99
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chr20 759846 rs8122052 G C 458.08 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.30;MQ0=0;OQ=1427.83;QD=39.66;SB=-695.83 GT:DP:GL:GQ 1/1:34:-146.38,-10.24,-0.01:99
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chr20 759874 rs490193 T C 130.89 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=57.96;MQ0=0;OQ=895.74;QD=29.86;SB=-410.36 GT:DP:GL:GQ 1/1:28:-93.18,-8.44,-0.02:84.22
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chr20 759975 rs491100 T C 847.04 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=2433.12;QD=35.26;SB=-1137.47 GT:DP:GL:GQ 1/1:69:-246.92,-20.79,-0.02:99
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chr20 760001 rs656768 A T 360.78 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=2;HaplotypeScore=1.41;MQ=59.44;MQ0=0;OQ=2829.39;QD=38.23;SB=-1421.80 GT:DP:GL:GQ 1/1:74:-286.54,-22.28,-0.01:99
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chr20 760730 rs519326 A C 736.92 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=2146.02;QD=35.18;SB=-970.10 GT:DP:GL:GQ 1/1:61:-218.21,-18.37,-0.02:99
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chr20 761667 . A G 0.04 FDRtranche2.00to10.00+ AB=0.82;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=0;HaplotypeScore=39.60;MQ=52.40;MQ0=1;OQ=64.46;QD=0.88;SB=-12.73 GT:DP:GL:GQ 0/1:56:-26.61,-16.88,-185.99:97.29
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chr20 761668 rs6086115 A G 0.57 FDRtranche2.00to10.00 AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.01;HRun=1;HaplotypeScore=42.64;MQ=52.70;MQ0=1;OQ=1137.15;QD=15.58;SB=-354.24 GT:DP:GL:GQ 0/1:59:-134.48,-17.48,-67.86:99
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chr20 761751 rs685119 C G 737.82 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2980.73;QD=43.20;SB=-1360.38 GT:DP:GL:GQ 1/1:69:-301.68,-20.79,-0.02:99
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chr20 763845 rs13038389 A C 532.76 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.24;MQ0=3;OQ=1888.14;QD=28.18;SB=-549.69 GT:DP:GL:GQ 1/1:60:-202.04,-18.07,-9.65:84.26
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chr20 764481 . C G 0.24 FDRtranche2.00to10.00 AB=0.63;AC=1;AF=0.50;AN=2;DP=22;Dels=0.00;HRun=2;HaplotypeScore=2.10;MQ=56.85;MQ0=0;OQ=50.58;QD=1.69;SB=29.13 GT:DP:GL:GQ 0/1:22:-14.98,-6.64,-75.74:83.41
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chr20 765688 . G T 0 FDRtranche2.00to10.00+ AB=0.73;AC=1;AF=0.50;AN=2;DP=61;Dels=0.04;HRun=20;HaplotypeScore=35.88;MQ=50.75;MQ0=0;OQ=120.86;QD=1.53;SB=110.34 GT:DP:GL:GQ 0/1:61:-33.14,-17.77,-166.00:99
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chr20 769909 . C T 10.04 PASS AB=0.20;AC=1;AF=0.50;AN=2;DP=8;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=227.29;QD=22.73;SB=-10.00 GT:DP:GL:GQ 0/1:8:-28.37,-2.41,-3.00:5.87
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chr20 772448 rs11906459 T C 492.37 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=3.09;MQ=59.67;MQ0=0;OQ=872.22;QD=12.64;SB=-358.62 GT:DP:GL:GQ 0/1:68:-111.01,-20.51,-126.78:99
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chr20 773678 rs538094 T C 272.33 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.45;MQ0=0;OQ=507.24;QD=33.82;SB=-35.67 GT:DP:GL:GQ 1/1:15:-54.32,-4.52,-0.01:45.13
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chr20 774513 rs2282051 C G 611.72 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=3.01;MQ=59.56;MQ0=0;OQ=789.77;QD=15.19;SB=-389.86 GT:DP:GL:GQ 0/1:49:-97.03,-14.77,-110.31:99
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chr20 774666 rs1045410 G T 789.31 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.97;MQ=59.24;MQ0=0;OQ=1001.61;QD=16.42;SB=-517.77 GT:DP:GL:GQ 0/1:59:-121.22,-17.78,-82.16:99
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chr20 776575 . C T 106.62 PASS AB=0.35;AC=1;AF=0.50;AN=2;DP=52;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.56;MQ0=0;OQ=1206.90;QD=23.21;SB=-464.04 GT:DP:GL:GQ 0/1:52:-139.64,-15.66,-66.80:99
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chr20 776591 rs58262002 C T 86.83 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.56;MQ0=0;OQ=1058.11;QD=20.35;SB=-391.91 GT:DP:GL:GQ 0/1:52:-124.76,-15.66,-76.58:99
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chr20 776791 rs1106699 C T 644.11 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=2.31;MQ=58.62;MQ0=0;OQ=1203.31;QD=18.80;SB=-520.06 GT:DP:GL:GQ 0/1:61:-142.00,-18.39,-81.88:99
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chr20 777309 . A C 38.28 DPFilter;LowQual AB=0.78;AC=1;AF=0.50;AN=2;DP=21;Dels=0.00;HRun=10;HaplotypeScore=8.70;MQ=57.05;MQ0=0;QD=1.20;SB=32.11 GT:DP:GL:GQ 0/1:21:-13.44,-6.33,-58.15:71.11
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chr20 777853 rs1810578 T G 665.13 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1549.40;QD=33.68;SB=-708.07 GT:DP:GL:GQ 1/1:45:-158.54,-13.56,-0.02:99
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chr20 779047 rs6516316 C T 367.74 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=1;HaplotypeScore=3.91;MQ=55.62;MQ0=0;OQ=944.27;QD=16.57;SB=-496.12 GT:DP:GL:GQ 0/1:54:-113.98,-16.27,-88.97:99
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chr20 779093 rs4813841 A G 697.98 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=55.29;MQ0=0;OQ=531.67;QD=10.22;SB=-269.24 GT:DP:GL:GQ 0/1:49:-71.22,-14.77,-109.18:99
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chr20 779251 rs6140423 A G 590.70 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.60;MQ0=0;OQ=852.02;QD=14.95;SB=-434.21 GT:DP:GL:GQ 0/1:55:-105.05,-16.57,-104.42:99
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chr20 779461 rs6140424 G A 643.03 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.76;MQ0=0;OQ=1334.75;QD=17.11;SB=-660.31 GT:DP:GL:GQ 0/1:77:-159.95,-23.19,-132.70:99
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chr20 780208 rs6140429 G A 271.10 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=2;HaplotypeScore=0.89;MQ=59.49;MQ0=0;OQ=728.51;QD=16.19;SB=-304.85 GT:DP:GL:GQ 0/1:42:-88.80,-12.66,-61.69:99
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chr20 780341 rs6077261 C T 758.68 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.74;MQ=58.65;MQ0=0;OQ=921.83;QD=13.36;SB=-308.27 GT:DP:GL:GQ 0/1:66:-115.37,-19.90,-119.17:99
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chr20 780796 rs55787763 C T 659.38 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=57.75;MQ0=0;OQ=728.56;QD=14.01;SB=-327.42 GT:DP:GL:GQ 0/1:50:-91.20,-15.06,-97.90:99
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chr20 780798 rs55821727 T C 291.48 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=3;HaplotypeScore=0.63;MQ=57.79;MQ0=0;OQ=679.81;QD=12.83;SB=-311.35 GT:DP:GL:GQ 0/1:51:-86.63,-15.36,-109.19:99
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chr20 780808 . G A 475.60 PASS AB=0.56;AC=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.11;MQ=57.75;MQ0=0;OQ=722.88;QD=13.90;SB=-329.31 GT:DP:GL:GQ 0/1:51:-90.94,-15.37,-97.79:99
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chr20 781357 rs6140433 T C 233.79 PASS AB=0.65;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=3.12;MQ=59.56;MQ0=0;OQ=449.34;QD=8.64;SB=-153.90 GT:DP:GL:GQ 0/1:50:-63.28,-15.06,-131.54:99
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chr20 784346 rs4813842 C A 620.86 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.92;MQ=59.67;MQ0=0;OQ=1955.33;QD=34.30;SB=-950.64 GT:DP:GL:GQ 1/1:55:-199.14,-16.57,-0.02:99
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chr20 784700 rs626703 C T 814.87 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.48;MQ0=0;OQ=3143.47;QD=39.29;SB=-1474.03 GT:DP:GL:GQ 1/1:80:-317.96,-24.10,-0.03:99
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chr20 784811 rs12624479 C T 529.68 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.16;MQ0=0;OQ=946.58;QD=17.21;SB=-235.72 GT:DP:GL:GQ 0/1:52:-113.61,-15.66,-84.98:99
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chr20 785076 rs577199 G A 317.02 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=1606.19;QD=40.15;SB=-251.33 GT:DP:GL:GQ 1/1:40:-164.21,-12.05,-0.01:99
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chr20 785424 . G A 406.09 PASS AB=0.49;AC=1;AF=0.50;AN=2;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.41;MQ0=0;OQ=978.52;QD=15.53;SB=-491.02 GT:DP:GL:GQ 0/1:62:-119.81,-18.68,-113.33:99
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chr20 785800 rs6140448 T C 420.08 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1706.97;QD=34.84;SB=-828.09 GT:DP:GL:GQ 1/1:48:-174.30,-14.46,-0.01:99
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chr20 785822 rs4816024 G A 240.65 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=1.84;MQ=60.00;MQ0=0;OQ=2030.22;QD=36.91;SB=-646.38 GT:DP:GL:GQ 1/1:51:-206.62,-15.37,-0.02:99
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chr20 786260 rs2183307 T C 730.05 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1988.99;QD=29.69;SB=-979.67 GT:DP:GL:GQ 1/1:64:-202.55,-19.31,-0.07:99
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chr20 787515 rs6055350 G C 248.45 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=2.52;MQ=60.00;MQ0=0;OQ=2504.61;QD=41.74;SB=-1016.20 GT:DP:GL:GQ 1/1:58:-254.07,-17.48,-0.02:99
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chr20 787568 rs6055353 G C 467.62 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=2.31;MQ=59.52;MQ0=0;OQ=1969.58;QD=41.03;SB=-935.31 GT:DP:GL:GQ 1/1:47:-200.56,-14.17,-0.02:99
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chr20 788405 rs6038974 G A 601.24 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=1.98;MQ=59.67;MQ0=0;OQ=2149.43;QD=37.71;SB=-1010.68 GT:DP:GL:GQ 1/1:55:-218.54,-16.57,-0.02:99
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chr20 789096 rs12625462 G A 743.20 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.82;MQ0=0;OQ=1226.79;QD=17.28;SB=-567.35 GT:DP:GL:GQ 0/1:70:-147.05,-21.09,-119.94:99
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chr20 789131 rs36068314 T C 450.79 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=2.73;MQ=58.70;MQ0=0;OQ=914.25;QD=13.44;SB=-457.82 GT:DP:GL:GQ 0/1:68:-115.20,-20.49,-132.75:99
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chr20 790616 rs4816027 G A 623.99 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.43;MQ0=0;OQ=2863.77;QD=37.68;SB=-1367.02 GT:DP:GL:GQ 1/1:72:-289.98,-21.69,-0.02:99
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chr20 790618 rs4816028 G A 634.12 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=56.28;MQ0=0;OQ=2672.38;QD=36.61;SB=-1285.33 GT:DP:GL:GQ 1/1:68:-270.85,-20.49,-0.02:99
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chr20 790694 rs6055385 A T 572.08 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.06;MQ0=0;OQ=1998.78;QD=37.01;SB=-790.18 GT:DP:GL:GQ 1/1:53:-203.48,-15.96,-0.01:99
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chr20 790696 rs6055386 A G 685.45 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.02;MQ0=0;OQ=1756.49;QD=33.78;SB=-731.24 GT:DP:GL:GQ 1/1:50:-179.25,-15.06,-0.02:99
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chr20 790913 rs6133512 T A 33.64 ABFilter;DPFilter;Indel;LowQual AB=0.82;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=2;HaplotypeScore=51.53;MQ=60.45;MQ0=1;QD=0.60;SB=68.25 GT:DP:GL:GQ 0/1:46:-20.51,-13.86,-148.12:66.47
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chr20 790938 rs6133513 A G 824.23 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=66.08;MQ0=0;OQ=2153.48;QD=35.89;SB=-894.69 GT:DP:GL:GQ 1/1:60:-218.95,-18.07,-0.02:99
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chr20 791043 rs6133514 A T 360.63 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=2;HaplotypeScore=2.17;MQ=60.00;MQ0=0;OQ=838.07;QD=14.70;SB=-355.41 GT:DP:GL:GQ 0/1:55:-103.66,-16.57,-103.26:99
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chr20 791843 rs12626011 G A 748.81 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.72;MQ0=0;OQ=1101.22;QD=16.69;SB=-570.45 GT:DP:GL:GQ 0/1:65:-133.00,-19.60,-100.70:99
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chr20 791945 rs4816029 A T 653.26 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.75;MQ0=0;OQ=1337.88;QD=17.84;SB=-470.57 GT:DP:GL:GQ 0/1:75:-159.66,-22.59,-129.07:99
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chr20 792672 rs4816030 C T 402.26 PASS AB=0.29;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.54;MQ0=0;OQ=1002.08;QD=24.44;SB=-408.20 GT:DP:GL:GQ 0/1:40:-115.54,-12.05,-39.27:99
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chr20 792692 rs4813845 T C 445.12 PASS AB=0.34;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.58;MQ0=0;OQ=820.24;QD=18.64;SB=-283.41 GT:DP:GL:GQ 0/1:43:-98.26,-12.96,-57.43:99
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chr20 792723 rs4816031 T C 403.18 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=1851.11;QD=34.93;SB=-755.18 GT:DP:GL:GQ 1/1:52:-188.71,-15.66,-0.02:99
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chr20 794983 rs884142 A C 435.75 Indel AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=1;HaplotypeScore=5.97;MQ=94.62;MQ0=0;QD=8.89;SB=-187.79 GT:DP:GL:GQ 0/1:44:-60.11,-13.26,-94.91:99
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chr20 795279 rs1556169 C G 641.33 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=59.67;MQ0=0;OQ=1476.29;QD=21.09;SB=-722.28 GT:DP:GL:GQ 0/1:70:-172.01,-21.10,-128.50:99
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chr20 795355 rs1556170 G A 779 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=59.59;MQ0=0;OQ=1195.10;QD=16.83;SB=-495.14 GT:DP:GL:GQ 0/1:70:-143.89,-21.10,-108.23:99
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chr20 795420 rs1556171 C T 797.11 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=1179.88;QD=14.94;SB=-471.49 GT:DP:GL:GQ 0/1:79:-145.07,-23.80,-151.63:99
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chr20 795495 rs1556172 C T 537.70 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=2.84;MQ=58.64;MQ0=0;OQ=852.85;QD=13.12;SB=-384.67 GT:DP:GL:GQ 0/1:65:-108.15,-19.58,-139.52:99
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chr20 796067 rs6055421 A G 2.69 PASS AB=0.69;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=14.00;MQ=58.93;MQ0=2;OQ=321.84;QD=5.45;SB=-166.15 GT:DP:GL:GQ 0/1:48:-49.93,-14.46,-128.87:99
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chr20 796112 rs6108085 T A 345.25 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=1.45;MQ=66.19;MQ0=0;OQ=1265.25;QD=34.20;SB=-405.76 GT:DP:GL:GQ 1/1:35:-130.12,-10.55,-0.01:99
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chr20 796371 rs12624328 C T 577.35 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.63;MQ=55.42;MQ0=0;OQ=940.14;QD=17.74;SB=-391.90 GT:DP:GL:GQ 0/1:50:-112.37,-15.07,-72.65:99
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chr20 796617 rs4816033 T C 408.20 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=83;Dels=0.00;HRun=2;HaplotypeScore=0.32;MQ=59.24;MQ0=0;OQ=1064.00;QD=12.37;SB=-316.30 GT:DP:GL:GQ 0/1:83:-134.69,-25.01,-166.31:99
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chr20 796897 rs1556173 T A 828.98 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.87;MQ0=0;OQ=3044.97;QD=37.13;SB=-967.62 GT:DP:GL:GQ 1/1:81:-308.10,-24.39,-0.01:99
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chr20 797169 rs1124740 C G 349.85 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.63;MQ0=0;OQ=1234.74;QD=19.60;SB=-546.58 GT:DP:GL:GQ 0/1:62:-145.46,-18.70,-112.18:99
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chr20 797249 rs12624622 C T 748.94 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=1.94;MQ=53.86;MQ0=0;OQ=1207.75;QD=16.10;SB=-528.76 GT:DP:GL:GQ 0/1:75:-146.67,-22.61,-119.41:99
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chr20 797388 rs944107 G C 752.48 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.36;MQ0=0;OQ=888.80;QD=13.67;SB=-452.46 GT:DP:GL:GQ 0/1:65:-111.77,-19.60,-162.07:99
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chr20 797587 . C T 0.09 FDRtranche2.00to10.00+ AB=0.75;AC=1;AF=0.50;AN=2;DP=72;Dels=0.01;HRun=6;HaplotypeScore=7.67;MQ=47.12;MQ0=0;OQ=338.15;QD=4.34;SB=107.30 GT:DP:GL:GQ 0/1:72:-58.50,-21.40,-188.82:99
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chr20 797593 . C T 0.15 FDRtranche2.00to10.00+ AB=0.67;AC=1;AF=0.50;AN=2;DP=74;Dels=0.00;HRun=5;HaplotypeScore=0.95;MQ=44.33;MQ0=0;OQ=519.50;QD=6.41;SB=125.32 GT:DP:GL:GQ 0/1:74:-77.54,-22.31,-174.27:99
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chr20 797599 rs56120237 C T 0 FDRtranche2.00to10.00+ AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.01;HRun=18;HaplotypeScore=1.00;MQ=44.09;MQ0=0;OQ=2892.02;QD=36.15;SB=-1352.67 GT:DP:GL:GQ 1/1:77:-292.81,-22.90,-0.03:99
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chr20 797653 rs6140478 G A 717.17 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.63;MQ0=0;OQ=1861.02;QD=37.22;SB=-925.25 GT:DP:GL:GQ 1/1:49:-189.71,-14.77,-0.02:99
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chr20 798376 rs1536912 A G 485.28 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=1;HaplotypeScore=1.00;MQ=58.71;MQ0=0;OQ=1863.32;QD=34.51;SB=-844.33 GT:DP:GL:GQ 1/1:52:-189.94,-15.66,-0.02:99
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chr20 798420 rs1536913 T C 665.28 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=58.39;MQ0=0;OQ=1996.16;QD=34.42;SB=-811.16 GT:DP:GL:GQ 1/1:56:-203.21,-16.87,-0.01:99
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chr20 800609 rs12480495 G A 510.71 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=2.84;MQ=58.98;MQ0=0;OQ=1014.45;QD=14.92;SB=-332.98 GT:DP:GL:GQ 0/1:63:-123.71,-18.99,-112.94:99
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chr20 800612 rs12480497 G A 586.93 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=1.79;MQ=59.28;MQ0=0;OQ=1033.45;QD=16.15;SB=-330.48 GT:DP:GL:GQ 0/1:61:-125.02,-18.39,-92.34:99
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chr20 801093 rs13044064 C T 442.44 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=2.70;MQ=59.22;MQ0=0;OQ=1211.70;QD=14.60;SB=-564.32 GT:DP:GL:GQ 0/1:82:-149.16,-24.70,-160.23:99
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chr20 801435 rs1888087 T G 20.94 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=6;HaplotypeScore=0.77;MQ=59.30;MQ0=0;OQ=2111.22;QD=31.99;SB=-852.08 GT:DP:GL:GQ 1/1:62:-214.73,-18.68,-0.03:99
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chr20 802134 rs4813850 G A 530.20 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=2.80;MQ=59.70;MQ0=0;OQ=1174.18;QD=15.25;SB=-359.87 GT:DP:GL:GQ 0/1:75:-143.30,-22.60,-140.00:99
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chr20 802251 rs12625616 G A 748.72 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.93;MQ=59.68;MQ0=0;OQ=850.83;QD=16.05;SB=-364.88 GT:DP:GL:GQ 0/1:51:-103.74,-15.37,-78.95:99
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chr20 802563 rs1360209 T G 347.48 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=2;HaplotypeScore=2.88;MQ=58.79;MQ0=0;OQ=685.59;QD=12.70;SB=-347.77 GT:DP:GL:GQ 0/1:50:-86.91,-15.06,-88.25:99
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chr20 802599 . C A 458.63 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=58.82;MQ0=0;OQ=884.74;QD=15.00;SB=-325.15 GT:DP:GL:GQ 0/1:56:-108.63,-16.87,-90.20:99
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chr20 802681 rs944108 C T 707.92 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=597.39;QD=11.95;SB=-290.79 GT:DP:GL:GQ 0/1:49:-77.78,-14.76,-107.37:99
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chr20 802754 rs944109 A G 723.34 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=60.00;MQ0=0;OQ=589.82;QD=11.13;SB=-275.41 GT:DP:GL:GQ 0/1:52:-77.93,-15.66,-118.28:99
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chr20 802940 rs944110 T C 109.54 PASS AB=0.71;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=4.29;MQ=57.61;MQ0=0;OQ=347.69;QD=5.52;SB=-178.13 GT:DP:GL:GQ 0/1:61:-56.43,-18.38,-181.94:99
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chr20 803339 rs6055483 A G 607.71 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=81;Dels=0.00;HRun=1;HaplotypeScore=1.45;MQ=59.46;MQ0=0;OQ=1005.27;QD=11.69;SB=-497.90 GT:DP:GL:GQ 0/1:81:-128.21,-24.40,-180.41:99
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chr20 804211 rs6077300 C A 557.56 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=-0.06;MQ=60.00;MQ0=0;OQ=886.77;QD=13.44;SB=-335.01 GT:DP:GL:GQ 0/1:65:-111.54,-19.58,-125.64:99
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chr20 804563 rs2015564 A G 265.07 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=0.94;MQ=60.00;MQ0=0;OQ=790.20;QD=12.75;SB=-200.46 GT:DP:GL:GQ 0/1:61:-100.68,-18.38,-124.25:99
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chr20 804747 rs944113 C T 623.16 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.40;MQ0=0;OQ=596.40;QD=14.55;SB=-311.83 GT:DP:GL:GQ 0/1:41:-75.28,-12.36,-78.65:99
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chr20 804837 rs944115 G A 266.30 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=7.39;MQ=58.15;MQ0=0;OQ=632.16;QD=13.17;SB=-278.30 GT:DP:GL:GQ 0/1:47:-80.66,-14.16,-98.75:99
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chr20 808151 rs55666732 A T 1.50 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=89;Dels=0.00;HRun=7;HaplotypeScore=1.75;MQ=60.00;MQ0=0;OQ=1205.70;QD=13.40;SB=-431.52 GT:DP:GL:GQ 0/1:89:-150.67,-26.81,-173.17:99
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chr20 808754 rs55809364 T C 357.59 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=4.34;MQ=59.63;MQ0=0;OQ=984.04;QD=15.87;SB=-455.95 GT:DP:GL:GQ 0/1:59:-119.46,-17.78,-104.69:99
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chr20 808802 rs6140526 G A 341.49 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=5.21;MQ=58.60;MQ0=0;OQ=1081.54;QD=18.03;SB=-453.99 GT:DP:GL:GQ 0/1:60:-129.52,-18.08,-90.32:99
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chr20 809386 rs6055525 G C 65.05 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=8.99;MQ=59.04;MQ0=0;OQ=1072.66;QD=15.77;SB=-428.32 GT:DP:GL:GQ 0/1:66:-130.44,-19.89,-157.73:99
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chr20 810991 . C G 416.01 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=1;HaplotypeScore=1.07;MQ=60.00;MQ0=0;OQ=1207.93;QD=16.78;SB=-459.77 GT:DP:GL:GQ 0/1:70:-145.17,-21.09,-160.13:99
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chr20 811271 rs6133546 A G 215.69 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=3;HaplotypeScore=3.04;MQ=60.00;MQ0=0;OQ=677.67;QD=11.89;SB=-281.56 GT:DP:GL:GQ 0/1:52:-86.73,-15.68,-99.20:99
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chr20 811508 rs16994527 A G 434.20 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=2;HaplotypeScore=1.45;MQ=59.23;MQ0=0;OQ=1050.75;QD=12.51;SB=-473.05 GT:DP:GL:GQ 0/1:82:-133.06,-24.70,-184.46:99
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chr20 811706 rs6055551 C T 759.49 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1027.59;QD=16.06;SB=-503.99 GT:DP:GL:GQ 0/1:64:-125.33,-19.29,-109.98:99
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chr20 811744 rs61141395 C T 679.44 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=60.00;MQ0=0;OQ=1150.21;QD=16.20;SB=-569.42 GT:DP:GL:GQ 0/1:71:-139.70,-21.40,-121.74:99
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chr20 811873 . C T 489.38 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=73;Dels=0.00;HRun=0;HaplotypeScore=1.25;MQ=60.00;MQ0=0;OQ=1130.34;QD=15.27;SB=-551.52 GT:DP:GL:GQ 0/1:73:-138.31,-21.99,-142.15:99
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chr20 812199 . G A 395.51 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=69;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=983.48;QD=14.05;SB=-467.95 GT:DP:GL:GQ 0/1:69:-122.42,-20.78,-138.28:99
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chr20 812455 rs3787564 T C 632.51 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=59.40;MQ0=0;OQ=806.95;QD=11.53;SB=-408.88 GT:DP:GL:GQ 0/1:67:-104.17,-20.19,-141.33:99
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chr20 812640 rs3787566 C T 445.21 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=3.04;MQ=59.18;MQ0=0;OQ=1252.44;QD=19.57;SB=-618.07 GT:DP:GL:GQ 0/1:63:-147.50,-18.98,-97.59:99
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chr20 812660 rs3787567 G T 458.47 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=3.60;MQ=58.99;MQ0=0;OQ=1295.25;QD=18.77;SB=-522.65 GT:DP:GL:GQ 0/1:68:-153.30,-20.49,-84.22:99
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chr20 813366 rs6077320 G T 701.97 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.82;MQ=59.22;MQ0=0;OQ=635.17;QD=13.23;SB=-220.46 GT:DP:GL:GQ 0/1:45:-80.35,-13.55,-83.60:99
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chr20 814230 rs12625015 C G 724.48 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=1.85;MQ=59.56;MQ0=0;OQ=889.20;QD=16.78;SB=-425.36 GT:DP:GL:GQ 0/1:53:-108.18,-15.97,-117.58:99
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chr20 814332 rs12625562 T A 372.88 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=2;HaplotypeScore=1.82;MQ=58.36;MQ0=0;OQ=1104.29;QD=16.99;SB=-575.40 GT:DP:GL:GQ 0/1:63:-132.69,-18.98,-105.06:99
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chr20 814350 rs12625348 A C 391.56 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=3.98;MQ=58.73;MQ0=0;OQ=704.96;QD=10.22;SB=-372.10 GT:DP:GL:GQ 0/1:64:-93.06,-19.28,-128.90:99
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chr20 814365 rs12626075 G A 779.09 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.80;MQ=59.00;MQ0=0;OQ=1093.26;QD=17.08;SB=-557.10 GT:DP:GL:GQ 0/1:63:-131.59,-18.98,-105.84:99
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chr20 815263 rs61494461 T C 585.18 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=0.96;MQ=59.40;MQ0=0;OQ=956.94;QD=12.43;SB=-422.89 GT:DP:GL:GQ 0/1:75:-121.56,-22.59,-173.89:99
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chr20 815324 rs6039055 A G 639.99 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1225.41;QD=14.94;SB=-561.60 GT:DP:GL:GQ 0/1:82:-150.52,-24.70,-167.86:99
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chr20 815337 rs60748410 C T 629.36 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1428.51;QD=17.86;SB=-575.40 GT:DP:GL:GQ 0/1:79:-169.93,-23.79,-131.43:99
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chr20 816639 rs11908593 T C 144.87 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=7.69;MQ=57.52;MQ0=0;OQ=657.92;QD=11.96;SB=-256.55 GT:DP:GL:GQ 0/1:51:-84.45,-15.37,-102.70:99
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chr20 817396 rs56011438 C A 477.74 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=1;HaplotypeScore=1.78;MQ=59.48;MQ0=0;OQ=455.98;QD=12.67;SB=-206.52 GT:DP:GL:GQ 0/1:35:-59.43,-10.55,-62.21:99
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chr20 818146 rs6140552 C T 658.10 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=1.40;MQ=59.77;MQ0=0;OQ=1319.06;QD=16.49;SB=-607.62 GT:DP:GL:GQ 0/1:78:-158.69,-23.50,-134.44:99
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chr20 819157 rs6118095 G C 671.21 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=1.60;MQ=60.00;MQ0=0;OQ=925.73;QD=16.83;SB=-444.91 GT:DP:GL:GQ 0/1:55:-112.45,-16.59,-114.14:99
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chr20 821483 . C T 112.02 PASS AB=0.55;AC=1;AF=0.50;AN=2;DP=44;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.05;MQ0=0;OQ=659.12;QD=14.98;SB=-301.77 GT:DP:GL:GQ 0/1:44:-82.45,-13.26,-79.67:99
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chr20 823028 rs55965819 C T 338.61 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=2;HaplotypeScore=0.47;MQ=58.99;MQ0=0;OQ=999.12;QD=16.65;SB=-444.96 GT:DP:GL:GQ 0/1:59:-120.97,-17.77,-107.92:99
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chr20 824420 rs537795 T C 720.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.60;MQ0=0;OQ=2045.40;QD=35.27;SB=-973.41 GT:DP:GL:GQ 1/1:56:-208.14,-16.86,-0.01:99
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chr20 827736 rs4816056 T C 669.89 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.77;MQ0=0;OQ=918.85;QD=14.82;SB=-480.01 GT:DP:GL:GQ 0/1:59:-112.96,-17.79,-101.00:99
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chr20 827823 . T A 388.33 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=49;Dels=0.00;HRun=0;HaplotypeScore=1.58;MQ=58.69;MQ0=0;OQ=904.11;QD=18.08;SB=-408.58 GT:DP:GL:GQ 0/1:49:-108.45,-14.76,-76.27:99
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chr20 827838 rs55814905 C G 252.13 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=2;HaplotypeScore=1.26;MQ=60.47;MQ0=0;OQ=1013.07;QD=19.86;SB=-515.30 GT:DP:GL:GQ 0/1:50:-119.68,-15.09,-83.85:99
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chr20 827895 rs6086388 T A 1.35 PASS AB=0.67;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.02;HRun=4;HaplotypeScore=25.67;MQ=60.55;MQ0=0;OQ=265.24;QD=6.17;SB=-61.78 GT:DP:GL:GQ 0/1:41:-41.86,-12.06,-99.83:99
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chr20 828090 rs534081 G A 727.32 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.83;MQ0=0;OQ=1913.07;QD=36.79;SB=-949.26 GT:DP:GL:GQ 1/1:49:-194.91,-14.77,-0.02:99
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chr20 830429 rs6055722 A G 669.79 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=60.00;MQ0=0;OQ=745.07;QD=12.63;SB=-371.97 GT:DP:GL:GQ 0/1:58:-95.28,-17.49,-110.44:99
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chr20 831923 rs542943 G T 708.59 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1993.05;QD=35.59;SB=-884.61 GT:DP:GL:GQ 1/1:56:-202.91,-16.87,-0.02:99
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chr20 837904 rs56256143 C A 562.73 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=2.30;MQ=59.76;MQ0=0;OQ=1241.48;QD=15.71;SB=-645.72 GT:DP:GL:GQ 0/1:78:-150.93,-23.50,-132.78:99
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chr20 838349 rs730169 G C 397.68 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=2.36;MQ=59.68;MQ0=0;OQ=1591.55;QD=21.80;SB=-817.30 GT:DP:GL:GQ 0/1:72:-184.14,-21.70,-128.40:99
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chr20 842722 rs910389 G A 689.51 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=-0.06;MQ=59.71;MQ0=0;OQ=1047.33;QD=16.11;SB=-491.03 GT:DP:GL:GQ 0/1:64:-127.29,-19.28,-121.59:99
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chr20 842881 rs523865 A G 754.15 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=996.82;QD=13.47;SB=-480.07 GT:DP:GL:GQ 0/1:72:-124.66,-21.69,-151.03:99
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chr20 842967 rs524765 G A 569.15 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=1.13;MQ=59.70;MQ0=0;OQ=2465.76;QD=39.14;SB=-979.31 GT:DP:GL:GQ 1/1:62:-250.18,-18.68,-0.02:99
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chr20 843325 rs11697918 A G 540.46 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=696.60;QD=9.17;SB=-253.93 GT:DP:GL:GQ 0/1:71:-94.35,-21.41,-164.04:99
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chr20 843423 rs6086446 C T 450.54 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=1;HaplotypeScore=2.62;MQ=58.93;MQ0=0;OQ=959.14;QD=16.83;SB=-443.97 GT:DP:GL:GQ 0/1:54:-115.47,-16.27,-85.12:99
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chr20 844012 rs478451 G A 419.48 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=3.10;MQ=58.15;MQ0=0;OQ=814.50;QD=16.97;SB=-256.25 GT:DP:GL:GQ 0/1:46:-98.60,-13.87,-69.05:99
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chr20 844299 rs502522 T C 705.26 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=2.44;MQ=59.36;MQ0=0;OQ=991.89;QD=15.26;SB=-478.09 GT:DP:GL:GQ 0/1:63:-121.45,-18.98,-113.59:99
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chr20 845062 rs509769 G C 149.97 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=58.81;MQ0=0;OQ=1348.75;QD=34.58;SB=-691.89 GT:DP:GL:GQ 1/1:33:-138.48,-9.95,-0.02:99
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chr20 845095 rs509880 A C 496.12 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=29;Dels=0.00;HRun=1;HaplotypeScore=1.25;MQ=59.42;MQ0=0;OQ=383.49;QD=11.98;SB=-182.92 GT:DP:GL:GQ 0/1:29:-50.37,-8.74,-51.24:99
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chr20 845495 rs56222355 C T 477.23 PASS AB=0.68;AC=1;AF=0.50;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.54;MQ0=0;OQ=352.54;QD=8.60;SB=-162.19 GT:DP:GL:GQ 0/1:41:-50.89,-12.35,-98.93:99
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chr20 845614 rs1997923 C T 664.93 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=1;HaplotypeScore=0.33;MQ=60.28;MQ0=0;OQ=688.41;QD=16.01;SB=-347.89 GT:DP:GL:GQ 0/1:42:-84.78,-12.65,-75.45:99
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chr20 846218 rs540995 T C 712.12 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=-0.06;MQ=59.25;MQ0=0;OQ=2170.52;QD=35.01;SB=-958.86 GT:DP:GL:GQ 1/1:62:-220.66,-18.68,-0.03:99
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chr20 846549 rs6055833 T G 650.23 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=1.90;MQ=60.00;MQ0=0;OQ=922.48;QD=14.88;SB=-369.80 GT:DP:GL:GQ 0/1:62:-114.21,-18.68,-110.07:99
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chr20 847379 rs6118205 G A 742.18 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.10;MQ0=0;OQ=1198.53;QD=16.65;SB=-596.61 GT:DP:GL:GQ 0/1:70:-144.23,-21.10,-110.92:99
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chr20 848014 rs6118207 G C 597.53 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.57;MQ=59.56;MQ0=1;OQ=1125.48;QD=16.55;SB=-346.05 GT:DP:GL:GQ 0/1:67:-136.02,-20.19,-151.22:99
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chr20 848637 rs62187504 T C 1120.65 Indel AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=2;HaplotypeScore=3.58;MQ=70.24;MQ0=0;QD=14.75;SB=-544.60 GT:DP:GL:GQ 0/1:72:-137.04,-21.69,-135.01:99
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chr20 848831 rs501322 C T 747.34 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.29;MQ0=0;OQ=834.76;QD=14.15;SB=-369.88 GT:DP:GL:GQ 0/1:59:-104.55,-17.79,-105.57:99
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chr20 848935 rs519304 G T 778.96 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=1.11;MQ=58.58;MQ0=0;OQ=1144.34;QD=13.96;SB=-508.58 GT:DP:GL:GQ 0/1:78:-141.22,-23.50,-126.07:99
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chr20 849676 rs530365 C T 722.42 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2395.63;QD=38.64;SB=-1106.49 GT:DP:GL:GQ 1/1:61:-243.17,-18.38,-0.02:99
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chr20 849882 rs553378 A G 731.22 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1810.54;QD=29.68;SB=-800.67 GT:DP:GL:GQ 1/1:58:-184.69,-17.49,-0.05:99
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chr20 849931 rs549506 G C 477.90 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=2.98;MQ=59.67;MQ0=0;OQ=977.02;QD=17.45;SB=-449.39 GT:DP:GL:GQ 0/1:56:-117.86,-16.88,-121.38:99
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chr20 850060 rs6133587 T G 710.39 Indel AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=60.00;MQ0=0;QD=11.10;SB=-343.58 GT:DP:GL:GQ 0/1:62:-93.01,-18.68,-116.90:99
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chr20 850310 rs573674 G C 653.81 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=932.12;QD=15.28;SB=-427.86 GT:DP:GL:GQ 0/1:61:-114.88,-18.39,-145.73:99
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chr20 850897 rs473051 C G 585.11 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=0.33;MQ=58.96;MQ0=0;OQ=1464.52;QD=18.08;SB=-734.37 GT:DP:GL:GQ 0/1:81:-174.14,-24.41,-174.92:99
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chr20 851020 rs474057 G A 4.18 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=37;Dels=0.00;HRun=0;HaplotypeScore=11.99;MQ=54.89;MQ0=1;OQ=544.77;QD=12.97;SB=-141.15 GT:DP:GL:GQ 0/1:37:-68.92,-11.16,-61.39:99
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chr20 853142 rs536411 C T 591.55 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1515.94;QD=19.19;SB=-589.12 GT:DP:GL:GQ 0/1:78:-178.38,-23.51,-110.63:99
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chr20 857450 rs473042 G C 703.22 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=59.72;MQ0=0;OQ=1550.94;QD=19.15;SB=-709.93 GT:DP:GL:GQ 0/1:81:-182.78,-24.40,-170.01:99
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chr20 857771 rs475922 C T 550.71 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.28;MQ0=0;OQ=3406.27;QD=40.55;SB=-1622.69 GT:DP:GL:GQ 1/1:84:-339.63,-25.30,-0.02:99
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chr20 857820 rs34797815 T C 289.58 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=3;HaplotypeScore=1.86;MQ=59.46;MQ0=0;OQ=966.42;QD=12.55;SB=-359.56 GT:DP:GL:GQ 0/1:76:-122.82,-22.90,-168.12:99
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chr20 857863 rs1854569 A T 12.06 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=5;HaplotypeScore=5.58;MQ=65.02;MQ0=1;OQ=828.97;QD=11.68;SB=-348.53 GT:DP:GL:GQ 0/1:70:-107.27,-21.09,-154.58:99
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chr20 858134 rs1329815 A C 528.18 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=58.61;MQ0=0;OQ=2338.03;QD=34.90;SB=-1194.12 GT:DP:GL:GQ 1/1:67:-237.41,-20.18,-0.02:99
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chr20 858266 rs1329816 T C 486.99 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=58.15;MQ0=0;OQ=3614.18;QD=35.78;SB=-1697.06 GT:DP:GL:GQ 1/1:100:-360.42,-30.12,-4.30:99
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chr20 858344 rs6077382 T G 730.68 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.98;MQ0=0;OQ=2424.39;QD=35.65;SB=-1141.09 GT:DP:GL:GQ 1/1:68:-246.04,-20.48,-0.02:99
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chr20 860259 rs7262296 C T 455.72 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.25;MQ0=0;OQ=3228.29;QD=39.86;SB=-1616.16 GT:DP:GL:GQ 1/1:80:-326.50,-24.10,-0.02:99
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chr20 860626 rs761570 A G 839.91 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2755.35;QD=35.32;SB=-1244.85 GT:DP:GL:GQ 1/1:76:-279.14,-22.89,-0.02:99
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chr20 860665 rs761571 T C 847.37 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2328.23;QD=36.38;SB=-1061.44 GT:DP:GL:GQ 1/1:64:-236.42,-19.27,-0.02:99
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chr20 861000 rs35862439 T C 189.47 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.07;MQ0=0;OQ=1390.93;QD=30.91;SB=-664.82 GT:DP:GL:GQ 1/1:44:-142.72,-13.27,-0.04:99
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chr20 861253 rs35514553 G A 10.48 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.01;HRun=3;HaplotypeScore=9.52;MQ=104.39;MQ0=0;OQ=2911.44;QD=38.82;SB=-1179.57 GT:DP:GL:GQ 1/1:74:-294.75,-21.99,-0.02:99
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chr20 861341 rs35969692 G A 495.22 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=2.30;MQ=118.12;MQ0=0;OQ=2324.70;QD=35.76;SB=-906.70 GT:DP:GL:GQ 1/1:62:-236.09,-18.69,-0.04:99
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chr20 861467 . G A 302.34 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=59.57;MQ0=0;OQ=2100.88;QD=38.91;SB=-955.76 GT:DP:GL:GQ 1/1:53:-213.69,-15.97,-0.02:99
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chr20 861736 rs35837479 C T 732.17 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=2931.67;QD=38.57;SB=-1117.00 GT:DP:GL:GQ 1/1:75:-296.78,-22.60,-0.03:99
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chr20 862407 rs513432 G T 705.25 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=3302.50;QD=37.53;SB=-1488.83 GT:DP:GL:GQ 1/1:88:-329.25,-26.50,-0.02:99
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chr20 862420 rs530008 T G 737.92 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2720.80;QD=30.92;SB=-1209.78 GT:DP:GL:GQ 1/1:85:-275.73,-25.62,-0.07:99
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chr20 863259 rs6077399 G A 546.41 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.89;MQ=59.41;MQ0=0;OQ=2774.19;QD=39.07;SB=-913.68 GT:DP:GL:GQ 1/1:70:-281.03,-21.09,-0.02:99
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chr20 863863 rs6086545 C A 730.86 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.71;MQ0=0;OQ=2245.75;QD=35.09;SB=-1052.48 GT:DP:GL:GQ 1/1:62:-228.18,-18.67,-0.02:99
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chr20 864803 rs501146 A C 643.13 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=1.09;MQ=59.22;MQ0=1;OQ=741.85;QD=11.78;SB=-304.98 GT:DP:GL:GQ 0/1:58:-94.95,-17.48,-97.51:99
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chr20 865795 rs531275 A T 600.61 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.19;MQ0=0;OQ=806.10;QD=15.50;SB=-219.61 GT:DP:GL:GQ 0/1:50:-98.95,-15.06,-90.34:99
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chr20 865817 rs531356 C T 385.71 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=1;HaplotypeScore=0.79;MQ=59.27;MQ0=0;OQ=1022.94;QD=17.95;SB=-256.77 GT:DP:GL:GQ 0/1:55:-122.16,-16.58,-77.97:99
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chr20 866480 rs558668 T A 577.31 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=56.79;MQ0=0;OQ=955.15;QD=14.69;SB=-312.68 GT:DP:GL:GQ 0/1:63:-117.77,-18.97,-123.87:99
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chr20 866584 rs559582 A G 706.21 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.23;MQ0=0;OQ=792.74;QD=11.49;SB=-383.03 GT:DP:GL:GQ 0/1:65:-102.15,-19.59,-135.65:99
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chr20 867023 rs473958 G A 604.81 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.60;MQ0=0;OQ=1103.82;QD=19.03;SB=-474.42 GT:DP:GL:GQ 0/1:58:-131.14,-17.47,-95.00:99
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chr20 868752 rs511582 A G 625.94 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.95;MQ0=0;OQ=1351.52;QD=33.79;SB=-610.24 GT:DP:GL:GQ 1/1:39:-138.75,-11.75,-0.02:99
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chr20 868850 rs533608 G A 830.93 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=2490.15;QD=36.62;SB=-952.35 GT:DP:GL:GQ 1/1:64:-252.62,-19.28,-0.02:99
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chr20 869971 rs564744 A G 509.41 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=1.62;MQ=58.90;MQ0=0;OQ=1522.14;QD=27.68;SB=-774.72 GT:DP:GL:GQ 1/1:49:-155.85,-14.78,-0.05:99
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chr20 870920 rs805640 A T 1724.23 Indel AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.02;HRun=6;HaplotypeScore=16.55;MQ=57.03;MQ0=0;QD=31.93;SB=-658.71 GT:DP:GL:GQ 1/1:50:-176.03,-14.76,-0.02:99
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chr20 871001 rs13042446 C T 1.87 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;HRun=0;HaplotypeScore=7.23;MQ=54.22;MQ0=0;OQ=982.71;QD=29.78;SB=-246.99 GT:DP:GL:GQ 1/1:27:-101.87,-8.14,-0.01:81.25
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chr20 871302 rs13037359 G A 469.79 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=58.06;MQ0=0;OQ=2768.19;QD=37.92;SB=-887.68 GT:DP:GL:GQ 1/1:70:-280.43,-21.09,-0.02:99
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chr20 871658 rs13037866 G A 812.20 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.45;MQ0=0;OQ=2365.13;QD=39.42;SB=-1200.36 GT:DP:GL:GQ 1/1:59:-240.11,-17.77,-0.01:99
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chr20 871659 rs13043418 C A 637.13 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=58.45;MQ0=0;OQ=2148.12;QD=35.80;SB=-1100.57 GT:DP:GL:GQ 1/1:59:-218.42,-17.77,-0.02:99
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chr20 872627 rs6086565 T C 706.34 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2718.14;QD=34.85;SB=-1378.57 GT:DP:GL:GQ 1/1:77:-275.42,-23.19,-0.03:99
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chr20 874325 rs518281 T C 760.60 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.75;MQ0=0;OQ=736.34;QD=14.16;SB=-377.01 GT:DP:GL:GQ 0/1:50:-91.98,-15.06,-101.30:99
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chr20 874354 rs502595 A G 319.53 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=2;HaplotypeScore=1.65;MQ=59.37;MQ0=0;OQ=748.58;QD=11.34;SB=-320.25 GT:DP:GL:GQ 0/1:65:-97.73,-19.59,-144.62:99
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chr20 874397 rs502716 G A 679.78 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.91;MQ=59.48;MQ0=0;OQ=1439.74;QD=17.77;SB=-703.24 GT:DP:GL:GQ 0/1:80:-171.37,-24.11,-121.82:99
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chr20 874585 rs504507 A G 631.53 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.56;MQ0=0;OQ=568.04;QD=13.52;SB=-178.98 GT:DP:GL:GQ 0/1:42:-72.75,-12.66,-75.93:99
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chr20 875148 rs530913 A G 517.18 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=3.26;MQ=59.34;MQ0=0;OQ=959.23;QD=15.23;SB=-471.06 GT:DP:GL:GQ 0/1:60:-117.28,-18.07,-110.31:99
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chr20 878480 rs17702759 C T 333.96 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.61;MQ0=0;OQ=619.27;QD=12.90;SB=-208.67 GT:DP:GL:GQ 0/1:47:-79.37,-14.16,-97.36:99
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chr20 879773 . A T 15.91 DPFilter;LowQual AB=0.89;AC=1;AF=0.50;AN=2;DP=31;Dels=0.00;HRun=20;HaplotypeScore=7.44;MQ=49.86;MQ0=2;QD=0.40;SB=62.23 GT:DP:GL:GQ 0/1:31:-14.20,-9.34,-104.99:48.63
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chr20 880019 rs2026762 C T 496.76 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=2.71;MQ=59.63;MQ0=0;OQ=936.71;QD=14.87;SB=-285.81 GT:DP:GL:GQ 0/1:58:-114.44,-17.49,-94.33:99
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chr20 880511 rs479846 C T 671.34 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.03;MQ=59.63;MQ0=0;OQ=979.20;QD=15.79;SB=-401.90 GT:DP:GL:GQ 0/1:59:-118.99,-17.78,-93.07:99
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chr20 880513 rs479848 T C 720.14 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=1.49;MQ=59.63;MQ0=0;OQ=699.76;QD=11.11;SB=-375.60 GT:DP:GL:GQ 0/1:58:-90.74,-17.48,-117.85:99
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chr20 880618 rs480789 T C 588.66 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=1;HaplotypeScore=1.57;MQ=60.00;MQ0=0;OQ=438.78;QD=10.45;SB=-240.29 GT:DP:GL:GQ 0/1:38:-58.61,-11.45,-80.69:99
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chr20 881034 rs484564 C T 758.66 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.88;MQ0=0;OQ=766.19;QD=13.21;SB=-399.13 GT:DP:GL:GQ 0/1:57:-97.07,-17.17,-117.55:99
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chr20 881201 rs491918 T C 599.38 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=59.68;MQ0=0;OQ=759.53;QD=10.55;SB=-246.17 GT:DP:GL:GQ 0/1:70:-100.34,-21.10,-155.79:99
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chr20 881758 rs512870 C T 381.33 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.68;MQ0=0;OQ=2798.38;QD=39.41;SB=-905.20 GT:DP:GL:GQ 1/1:70:-283.44,-21.09,-0.02:99
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chr20 882133 rs521267 T C 16.10 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.02;HRun=0;HaplotypeScore=6.99;MQ=107.88;MQ0=0;OQ=1980.20;QD=31.43;SB=-1009.30 GT:DP:GL:GQ 1/1:63:-201.66,-18.70,-0.05:99
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chr20 882313 rs6140734 G A 414.62 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=1.31;MQ=58.23;MQ0=0;OQ=1336.72;QD=36.13;SB=-438.31 GT:DP:GL:GQ 1/1:35:-137.27,-10.55,-0.01:99
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chr20 882948 rs550408 T C 842.30 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=52.66;MQ0=0;OQ=2977.93;QD=34.63;SB=-1093.77 GT:DP:GL:GQ 1/1:82:-301.40,-24.70,-0.02:99
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chr20 883061 rs2422567 C T 367.83 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=3.70;MQ=56.11;MQ0=0;OQ=1885.32;QD=36.97;SB=-942.34 GT:DP:GL:GQ 1/1:48:-192.13,-14.46,-0.01:99
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chr20 883327 rs553424 T C 349.99 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=25.91;MQ0=0;OQ=1005.34;QD=23.94;SB=-437.83 GT:DP:GL:GQ 1/1:29:-104.13,-8.74,-0.01:87.25
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chr20 883329 rs553426 C G 563.23 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=25.82;MQ0=0;OQ=1169.12;QD=28.52;SB=-588.97 GT:DP:GL:GQ 1/1:28:-120.51,-8.44,-0.01:84.28
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chr20 885267 rs6118354 T C 620.55 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=0.81;MQ=59.37;MQ0=0;OQ=2222.83;QD=33.68;SB=-816.28 GT:DP:GL:GQ 1/1:63:-225.89,-18.98,-0.03:99
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chr20 885689 rs56117459 C T 445.77 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=32;Dels=0.00;HRun=0;HaplotypeScore=2.04;MQ=59.18;MQ0=0;OQ=592.10;QD=16.92;SB=-249.78 GT:DP:GL:GQ 0/1:32:-72.14,-9.65,-44.37:99
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chr20 886030 rs6140775 G A 222.86 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=59.42;MQ0=0;OQ=1181.50;QD=36.92;SB=-249.33 GT:DP:GL:GQ 1/1:30:-121.74,-9.04,-0.01:90.30
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chr20 889724 rs567204 G T 635.24 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.57;MQ=58.07;MQ0=0;OQ=2417.26;QD=35.55;SB=-1047.18 GT:DP:GL:GQ 1/1:67:-245.33,-20.18,-0.02:99
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chr20 909220 rs6086773 T C 619.23 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=1;HaplotypeScore=1.85;MQ=59.65;MQ0=0;OQ=705.20;QD=13.06;SB=-274.43 GT:DP:GL:GQ 0/1:52:-89.47,-15.66,-109.83:99
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chr20 923022 rs6056485 C T 741.86 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=1.76;MQ=59.35;MQ0=0;OQ=1102.38;QD=17.22;SB=-492.51 GT:DP:GL:GQ 0/1:63:-132.50,-18.98,-108.64:99
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chr20 931111 rs6077512 G C 4.76 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=409.24;QD=37.20;SB=-10.00 GT:DP:GL:GQ 1/1:11:-44.52,-3.32,-0.01:33.10
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chr20 932766 rs4816130 C G 378.40 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=1;HaplotypeScore=3.71;MQ=58.82;MQ0=0;OQ=693.91;QD=14.16;SB=-220.03 GT:DP:GL:GQ 0/1:46:-86.54,-13.87,-112.42:99
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chr20 934082 rs6108282 A G 745.70 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=2295.22;QD=35.31;SB=-1079.46 GT:DP:GL:GQ 1/1:64:-233.12,-19.28,-0.02:99
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chr20 934114 rs6086845 T A 487.86 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=2;HaplotypeScore=0.98;MQ=59.34;MQ0=0;OQ=2572.79;QD=36.75;SB=-1232.20 GT:DP:GL:GQ 1/1:69:-260.88,-20.78,-0.02:99
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chr20 934594 . G A 461.86 PASS AB=0.48;AC=1;AF=0.50;AN=2;DP=79;Dels=0.00;HRun=0;HaplotypeScore=1.52;MQ=59.77;MQ0=0;OQ=1378.81;QD=17.24;SB=-606.64 GT:DP:GL:GQ 0/1:79:-164.97,-23.81,-121.24:99
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chr20 935714 rs6039446 A G 555.48 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.33;MQ0=0;OQ=2896.43;QD=34.48;SB=-1418.92 GT:DP:GL:GQ 1/1:81:-293.25,-24.40,-0.03:99
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chr20 936864 rs6140924 A G 588.79 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.50;MQ0=0;OQ=2568.88;QD=34.25;SB=-1297.52 GT:DP:GL:GQ 1/1:72:-260.50,-21.69,-0.03:99
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chr20 937440 rs34152670 A T 2758.06 Indel AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=113.51;MQ0=0;QD=32.07;SB=-1298.19 GT:DP:GL:GQ 1/1:84:-293.83,-25.30,-14.44:99
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chr20 940256 rs6039457 C T 532.19 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=0.10;MQ=60.00;MQ0=0;OQ=1995.96;QD=37.66;SB=-708.44 GT:DP:GL:GQ 1/1:51:-203.20,-15.37,-0.02:99
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chr20 943281 rs6056615 C A 770.05 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1570.53;QD=34.90;SB=-687.67 GT:DP:GL:GQ 1/1:44:-160.65,-13.25,-0.02:99
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chr20 943311 rs6056616 C A 509.28 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=60.00;MQ0=0;OQ=2287.23;QD=36.31;SB=-941.04 GT:DP:GL:GQ 1/1:62:-232.32,-18.67,-0.02:99
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chr20 944068 . A T 149.58 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.29;MQ0=0;OQ=3859.23;QD=38.59;SB=-1533.97 GT:DP:GL:GQ 1/1:99:-384.92,-29.81,-0.02:99
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chr20 944069 rs926821 T C 815.24 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.29;MQ0=0;OQ=3682.81;QD=36.83;SB=-1457.95 GT:DP:GL:GQ 1/1:100:-367.28,-30.12,-0.03:99
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chr20 944293 rs926822 A G 202.30 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=3.81;MQ=58.88;MQ0=0;OQ=1877.65;QD=30.28;SB=-717.70 GT:DP:GL:GQ 1/1:59:-191.40,-17.79,-0.05:99
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chr20 946167 rs6133711 C T 711.28 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=3359.74;QD=40.00;SB=-1353.76 GT:DP:GL:GQ 1/1:83:-334.97,-25.01,-0.03:99
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chr20 946383 rs926823 T C 59.45 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=1;HaplotypeScore=5.62;MQ=59.08;MQ0=0;OQ=2492.01;QD=35.10;SB=-1072.44 GT:DP:GL:GQ 1/1:69:-252.80,-20.78,-0.02:99
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chr20 946566 rs926824 C G 385.44 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;HRun=1;HaplotypeScore=1.24;MQ=59.29;MQ0=0;OQ=3968.70;QD=43.61;SB=-1359.93 GT:DP:GL:GQ 1/1:89:-395.87,-26.82,-0.03:99
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chr20 946589 rs926825 G A 261.40 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;HRun=0;HaplotypeScore=4.80;MQ=59.28;MQ0=0;OQ=3565.07;QD=39.61;SB=-1578.09 GT:DP:GL:GQ 1/1:89:-355.51,-26.82,-0.03:99
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chr20 946813 rs4816139 A G 396.55 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=2.30;MQ=59.50;MQ0=0;OQ=2548.40;QD=33.98;SB=-776.20 GT:DP:GL:GQ 1/1:73:-258.45,-21.99,-0.03:99
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chr20 946957 rs4816140 C G 737.65 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.41;MQ0=0;OQ=3001.41;QD=42.27;SB=-1132.56 GT:DP:GL:GQ 1/1:69:-303.75,-20.79,-0.02:99
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chr20 946996 rs4816141 C T 819.10 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.33;MQ0=0;OQ=2756.32;QD=39.95;SB=-1387.84 GT:DP:GL:GQ 1/1:69:-279.24,-20.79,-0.02:99
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chr20 947048 rs6077542 A G 690.23 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.28;MQ0=0;OQ=1989.68;QD=34.30;SB=-825.05 GT:DP:GL:GQ 1/1:58:-202.58,-17.47,-0.03:99
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chr20 947105 rs6140944 G A 613.62 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.67;MQ0=0;OQ=2239.32;QD=39.29;SB=-1138.49 GT:DP:GL:GQ 1/1:56:-227.53,-16.87,-0.02:99
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chr20 947106 . A G 161.85 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.67;MQ0=0;OQ=2010.76;QD=35.28;SB=-984.73 GT:DP:GL:GQ 1/1:57:-204.68,-17.17,-0.02:99
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chr20 947143 rs6140946 G T 608.94 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=2.45;MQ=60.00;MQ0=0;OQ=2788.91;QD=35.76;SB=-1195.09 GT:DP:GL:GQ 1/1:77:-282.50,-23.19,-0.02:99
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chr20 947572 rs6056635 G A 710 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.34;MQ0=0;OQ=2794.43;QD=39.92;SB=-1215.62 GT:DP:GL:GQ 1/1:70:-283.05,-21.09,-0.02:99
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chr20 947752 rs6140951 C T 776.36 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2308.60;QD=40.50;SB=-1042.70 GT:DP:GL:GQ 1/1:57:-234.45,-17.17,-0.01:99
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chr20 947784 rs6056637 C T 805.10 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2334.45;QD=39.57;SB=-1058.92 GT:DP:GL:GQ 1/1:59:-237.05,-17.77,-0.02:99
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chr20 948072 rs6056638 A G 615.85 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=53.34;MQ0=0;OQ=2285.29;QD=34.63;SB=-910.71 GT:DP:GL:GQ 1/1:64:-232.13,-19.28,-0.02:99
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chr20 948152 rs6056639 C T 764.86 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=52.94;MQ0=0;OQ=1664.44;QD=38.71;SB=-843.63 GT:DP:GL:GQ 1/1:43:-170.04,-12.96,-0.01:99
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chr20 948179 rs6056640 A C 324.01 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=2;HaplotypeScore=2.24;MQ=53.68;MQ0=0;OQ=1468.41;QD=31.24;SB=-659.24 GT:DP:GL:GQ 1/1:44:-150.45,-13.25,-0.02:99
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chr20 948303 rs6056641 T C 364.21 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.42;MQ0=0;OQ=1453.86;QD=36.35;SB=-225.10 GT:DP:GL:GQ 1/1:40:-148.98,-12.05,-0.01:99
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chr20 948386 rs6056642 T C 60.17 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;HRun=1;HaplotypeScore=3.17;MQ=47.41;MQ0=1;OQ=908.92;QD=27.54;SB=-377.48 GT:DP:GL:GQ 1/1:27:-94.49,-8.14,-0.01:81.22
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chr20 948420 rs6056643 T C 208 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;HRun=1;HaplotypeScore=0.41;MQ=40.06;MQ0=2;OQ=835.66;QD=26.11;SB=-321.13 GT:DP:GL:GQ 1/1:24:-87.16,-7.23,-0.01:72.22
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chr20 948506 . T C 2.12 PASS AB=0.64;AC=1;AF=0.50;AN=2;DP=35;Dels=0.00;HRun=1;HaplotypeScore=5.71;MQ=121.74;MQ0=1;OQ=198.30;QD=4.72;SB=-76.52 GT:DP:GL:GQ 0/1:35:-33.66,-10.55,-96.88:99
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chr20 948838 rs6056646 G C 578.34 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=57.57;MQ0=0;OQ=2461.17;QD=42.43;SB=-1023.28 GT:DP:GL:GQ 1/1:58:-249.72,-17.48,-0.02:99
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chr20 949760 rs4816142 T C 838.05 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.68;MQ0=0;OQ=2515.05;QD=34.45;SB=-1151.49 GT:DP:GL:GQ 1/1:71:-255.11,-21.39,-0.02:99
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chr20 949805 rs4816143 C T 729.23 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.10;MQ=58.99;MQ0=0;OQ=2282.51;QD=36.81;SB=-983.33 GT:DP:GL:GQ 1/1:59:-231.86,-17.78,-0.02:99
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chr20 949987 rs2223960 C G 388.80 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.35;MQ0=0;OQ=2808.48;QD=43.88;SB=-808.85 GT:DP:GL:GQ 1/1:64:-284.45,-19.28,-0.02:99
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chr20 950042 rs2207321 C A 630.48 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.66;MQ0=0;OQ=2396.28;QD=35.77;SB=-1089.50 GT:DP:GL:GQ 1/1:66:-243.23,-19.88,-0.02:99
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chr20 950255 rs2207322 T C 831.03 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=58.78;MQ0=0;OQ=2428.02;QD=35.19;SB=-1050.42 GT:DP:GL:GQ 1/1:68:-246.41,-20.48,-0.02:99
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chr20 952630 rs2873433 A G 723.93 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.81;MQ0=0;OQ=3067.29;QD=31.95;SB=-1382.74 GT:DP:GL:GQ 1/1:94:-310.38,-28.34,-0.07:99
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chr20 953873 rs4816146 C T 407.94 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.48;MQ0=0;OQ=3320.26;QD=40.99;SB=-1543.71 GT:DP:GL:GQ 1/1:81:-331.03,-24.40,-0.02:99
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chr20 955630 rs6039500 C T 809.85 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.47;MQ0=0;OQ=3124.55;QD=39.55;SB=-1491.67 GT:DP:GL:GQ 1/1:78:-316.06,-23.50,-0.02:99
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chr20 956465 rs6056706 G A 570.13 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=2.94;MQ=60.00;MQ0=0;OQ=1966.13;QD=35.75;SB=-995.30 GT:DP:GL:GQ 1/1:51:-200.22,-15.37,-0.02:99
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chr20 956495 rs6140963 C G 618.71 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=1.74;MQ=60.00;MQ0=0;OQ=2087.63;QD=37.28;SB=-1041.59 GT:DP:GL:GQ 1/1:55:-212.41,-16.61,-0.06:99
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chr20 957232 rs6056709 C T 698.31 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2844.27;QD=40.63;SB=-1290.73 GT:DP:GL:GQ 1/1:70:-288.03,-21.08,-0.01:99
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chr20 957361 rs6039508 T G 685.33 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.57;MQ0=0;OQ=3069.08;QD=35.28;SB=-1478.73 GT:DP:GL:GQ 1/1:87:-310.52,-26.20,-0.02:99
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chr20 957679 rs879013 G A 579.94 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=60.00;MQ0=0;OQ=1977.19;QD=34.09;SB=-653.68 GT:DP:GL:GQ 1/1:53:-201.33,-15.97,-0.03:99
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chr20 957788 rs879012 C T 568.50 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=1.05;MQ=59.23;MQ0=0;OQ=2363.97;QD=39.40;SB=-1105.46 GT:DP:GL:GQ 1/1:60:-240.00,-18.08,-0.02:99
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chr20 959268 rs13041030 A T 483.27 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=3.75;MQ=59.16;MQ0=0;OQ=3005.38;QD=36.21;SB=-1302.99 GT:DP:GL:GQ 1/1:81:-304.15,-24.40,-0.02:99
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chr20 960026 rs11696364 C A 723.50 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=1.15;MQ=59.72;MQ0=0;OQ=1004.70;QD=15.22;SB=-481.89 GT:DP:GL:GQ 0/1:66:-123.63,-19.88,-118.48:99
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chr20 960759 . C T 429.01 PASS AB=0.61;AC=1;AF=0.50;AN=2;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.72;MQ=58.67;MQ0=0;OQ=683.58;QD=11.39;SB=-352.08 GT:DP:GL:GQ 0/1:59:-89.43,-17.79,-119.33:99
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chr20 960798 rs4816153 G A 772.26 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.19;MQ0=0;OQ=1743.23;QD=37.90;SB=-811.07 GT:DP:GL:GQ 1/1:46:-177.93,-13.87,-0.02:99
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chr20 961016 rs35894546 G A 732.79 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.02;MQ0=0;OQ=2775.07;QD=39.09;SB=-1312.27 GT:DP:GL:GQ 1/1:70:-281.11,-21.09,-0.02:99
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chr20 962974 rs11087849 A G 639.87 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=60.00;MQ0=0;OQ=2816.49;QD=35.21;SB=-1011.36 GT:DP:GL:GQ 1/1:79:-285.27,-23.80,-0.03:99
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chr20 965193 rs2064729 T C 259.96 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1119.13;QD=30.25;SB=-516.08 GT:DP:GL:GQ 1/1:36:-115.54,-10.86,-0.04:99
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chr20 965232 rs11699432 C T 781.40 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2066.12;QD=37.57;SB=-817.61 GT:DP:GL:GQ 1/1:53:-210.21,-15.97,-0.02:99
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chr20 965286 rs2064731 A G 686.13 Indel AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=4;HaplotypeScore=3.00;MQ=60.00;MQ0=0;QD=11.25;SB=-282.42 GT:DP:GL:GQ 0/1:60:-89.97,-18.07,-139.81:99
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chr20 965661 rs11697870 G A 828.59 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.22;MQ0=0;OQ=1984.91;QD=36.76;SB=-946.74 GT:DP:GL:GQ 1/1:52:-202.10,-15.67,-0.02:99
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chr20 966057 rs6108322 G A 515.16 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=1.62;MQ=59.45;MQ0=0;OQ=2891.32;QD=39.07;SB=-815.35 GT:DP:GL:GQ 1/1:72:-292.73,-21.69,-0.01:99
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chr20 966350 rs2064733 T C 799.38 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=89.14;MQ0=0;OQ=2210.13;QD=32.03;SB=-924.48 GT:DP:GL:GQ 1/1:69:-224.65,-20.81,-0.06:99
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chr20 967132 rs11697782 T G 254.76 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=4;HaplotypeScore=1.46;MQ=59.53;MQ0=0;OQ=1085.45;QD=12.20;SB=-405.62 GT:DP:GL:GQ 0/1:88:-138.34,-26.51,-170.35:99
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chr20 969241 rs6056803 G A 808.06 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.62;MQ0=0;OQ=3105.83;QD=39.82;SB=-1488.96 GT:DP:GL:GQ 1/1:76:-314.18,-22.89,-0.01:99
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chr20 970712 rs6056813 C A 844.45 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2322.79;QD=35.19;SB=-1033.52 GT:DP:GL:GQ 1/1:65:-235.88,-19.58,-0.02:99
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chr20 971687 rs1884514 A C 325.63 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=2.02;MQ=59.34;MQ0=0;OQ=2118.75;QD=33.63;SB=-1068.48 GT:DP:GL:GQ 1/1:61:-215.48,-18.37,-0.02:99
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chr20 972605 rs4816168 G A 822.98 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=2999.46;QD=38.45;SB=-1332.27 GT:DP:GL:GQ 1/1:75:-303.55,-22.59,-0.02:99
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chr20 976709 rs4816173 C A 850.36 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=61.96;MQ0=0;OQ=2664.85;QD=36.01;SB=-1110.96 GT:DP:GL:GQ 1/1:73:-270.09,-21.99,-0.02:99
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chr20 979837 rs2224228 A G 607.06 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.67;MQ0=0;OQ=1659.15;QD=29.11;SB=-747.96 GT:DP:GL:GQ 1/1:55:-173.92,-16.59,-4.42:99
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chr20 983535 . G C 184.89 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;HRun=2;HaplotypeScore=0.47;MQ=59.27;MQ0=0;OQ=2533.79;QD=40.22;SB=-1254.77 GT:DP:GL:GQ 1/1:60:-256.99,-18.09,-0.03:99
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chr20 986912 rs6039609 T C 709.27 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2810.97;QD=35.14;SB=-1276.55 GT:DP:GL:GQ 1/1:80:-284.72,-24.10,-0.04:99
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chr20 987336 rs761857 A C 429.47 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=1.81;MQ=60.00;MQ0=0;OQ=2162.78;QD=34.88;SB=-827.08 GT:DP:GL:GQ 1/1:62:-219.89,-18.68,-0.03:99
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chr20 988861 rs6056973 G A 387.86 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=2659.31;QD=40.29;SB=-1018.82 GT:DP:GL:GQ 1/1:66:-269.54,-19.89,-0.02:99
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chr20 989340 rs6141074 C T 331.94 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=1.80;MQ=60.00;MQ0=0;OQ=1856.38;QD=37.89;SB=-571.95 GT:DP:GL:GQ 1/1:48:-189.24,-14.46,-0.02:99
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chr20 989344 rs6056978 T C 167.49 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;HRun=2;HaplotypeScore=1.12;MQ=60.00;MQ0=0;OQ=1448.20;QD=30.17;SB=-390.28 GT:DP:GL:GQ 1/1:45:-148.44,-13.57,-0.04:99
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chr20 990200 rs11087853 A T 619.09 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=1.23;MQ=92.34;MQ0=0;OQ=2442.20;QD=34.40;SB=-1239.50 GT:DP:GL:GQ 1/1:66:-247.83,-19.88,-0.02:99
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chr20 990647 rs6141080 A C 455.04 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=57.57;MQ0=0;OQ=1725.53;QD=30.81;SB=-494.02 GT:DP:GL:GQ 1/1:51:-176.17,-15.37,-0.03:99
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chr20 991075 rs761858 C T 450.10 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=2;HaplotypeScore=1.46;MQ=59.13;MQ0=0;OQ=2935.17;QD=39.14;SB=-1452.97 GT:DP:GL:GQ 1/1:74:-297.13,-22.30,-0.02:99
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chr20 993623 rs1884510 G A 810.50 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=3352.31;QD=39.91;SB=-1134.00 GT:DP:GL:GQ 1/1:83:-334.23,-25.01,-0.02:99
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chr20 994045 rs4813904 A G 708.05 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.85;MQ0=0;OQ=2238.87;QD=34.98;SB=-816.32 GT:DP:GL:GQ 1/1:63:-227.49,-18.98,-0.02:99
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chr20 996093 rs4239778 T C 560.39 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.75;MQ0=0;OQ=3204.54;QD=35.21;SB=-1470.30 GT:DP:GL:GQ 1/1:90:-324.07,-27.11,-0.03:99
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chr20 996828 rs6057055 A T 745.34 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.72;MQ0=0;OQ=2952.74;QD=36.01;SB=-1047.59 GT:DP:GL:GQ 1/1:80:-298.88,-24.09,-0.02:99
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chr20 996933 rs6057056 T C 531.47 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1893.66;QD=31.56;SB=-815.72 GT:DP:GL:GQ 1/1:58:-192.99,-17.48,-0.04:99
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chr20 997506 rs6087090 G A 629.04 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.33;MQ=60.00;MQ0=0;OQ=3399.14;QD=40.47;SB=-1437.34 GT:DP:GL:GQ 1/1:83:-338.91,-25.00,-0.02:99
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chr20 998326 rs1884512 C G 610.06 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.41;MQ0=1;OQ=3602.67;QD=43.41;SB=-1224.52 GT:DP:GL:GQ 1/1:81:-359.27,-24.41,-0.02:99
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chr20 998408 rs1884513 T C 746.17 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.61;MQ0=0;OQ=2093.48;QD=35.48;SB=-1072.45 GT:DP:GL:GQ 1/1:58:-212.95,-17.47,-0.01:99
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chr20 998556 rs6057063 G A 558.33 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;HRun=0;HaplotypeScore=1.82;MQ=102.31;MQ0=0;OQ=3598.27;QD=40.89;SB=-1560.36 GT:DP:GL:GQ 1/1:88:-358.83,-26.51,-0.02:99
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chr20 998896 rs6087091 C T 179.46 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=7.53;MQ=59.68;MQ0=0;OQ=1310.55;QD=17.95;SB=-592.12 GT:DP:GL:GQ 0/1:72:-156.03,-21.69,-121.00:99
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chr20 999132 rs6057067 A T 426.68 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=1.81;MQ=60.00;MQ0=0;OQ=3130.01;QD=36.82;SB=-1447.54 GT:DP:GL:GQ 1/1:83:-316.61,-25.00,-0.02:99
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chr20 999568 rs5003700 G A 366.39 PASS AB=0.67;AC=1;AF=0.50;AN=2;DB;DP=11;Dels=0.00;HRun=0;HaplotypeScore=2.00;MQ=45.55;MQ0=0;OQ=92.41;QD=7.70;SB=-48.66 GT:DP:GL:GQ 0/1:11:-15.84,-3.32,-22.38:99
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chr20 999570 rs2317424 G A 257.91 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=48.78;MQ0=0;OQ=432.45;QD=28.83;SB=-171.67 GT:DP:GL:GQ 1/1:14:-50.17,-4.22,-3.47:7.45
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chr20 999686 rs4816194 A G 372.71 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.13;MQ0=0;OQ=1443.91;QD=30.08;SB=-115.05 GT:DP:GL:GQ 1/1:48:-148.03,-14.49,-0.06:99
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chr20 999858 rs4813907 T C 589.96 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.33;MQ0=0;OQ=2032.57;QD=33.88;SB=-490.47 GT:DP:GL:GQ 1/1:60:-206.87,-18.07,-0.02:99
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chr20 1000215 rs4816195 C T 688.28 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.52;MQ0=1;OQ=1974.99;QD=37.98;SB=-867.14 GT:DP:GL:GQ 1/1:50:-201.10,-15.06,-0.02:99
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chr20 1000599 rs6077624 C T 691.62 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.19;MQ0=0;OQ=2431.15;QD=39.21;SB=-971.98 GT:DP:GL:GQ 1/1:62:-246.72,-18.68,-0.02:99
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chr20 1001502 rs6057078 T C 834.69 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.69;MQ0=0;OQ=2696.61;QD=36.44;SB=-1351.90 GT:DP:GL:GQ 1/1:74:-273.26,-22.29,-0.02:99
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chr20 1001706 rs728566 C T 441.96 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=1;HaplotypeScore=1.80;MQ=60.00;MQ0=0;OQ=3125.09;QD=38.58;SB=-1367.02 GT:DP:GL:GQ 1/1:78:-316.11,-23.50,-0.02:99
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chr20 1002021 rs6057085 C T 563.21 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3457.84;QD=41.16;SB=-1584.61 GT:DP:GL:GQ 1/1:84:-344.78,-25.30,-0.02:99
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chr20 1002801 rs2317425 A C 599.97 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2131.48;QD=33.83;SB=-968.07 GT:DP:GL:GQ 1/1:62:-216.76,-18.68,-0.03:99
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chr20 1003720 rs6057111 A G 838.08 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.78;MQ0=0;OQ=3026.19;QD=35.19;SB=-1247.63 GT:DP:GL:GQ 1/1:85:-306.23,-25.60,-0.03:99
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chr20 1003985 rs6057113 A C 627.67 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=126.49;MQ0=0;OQ=2090.87;QD=35.44;SB=-982.09 GT:DP:GL:GQ 1/1:59:-212.69,-17.77,-0.02:99
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chr20 1005402 rs6039664 G T 616.49 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2230.28;QD=36.56;SB=-943.02 GT:DP:GL:GQ 1/1:61:-226.63,-18.37,-0.02:99
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chr20 1005824 rs6057117 G A 605.40 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3080.26;QD=39.49;SB=-1462.38 GT:DP:GL:GQ 1/1:76:-311.63,-22.89,-0.01:99
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chr20 1006879 rs6057125 C A 457.89 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=1.09;MQ=59.64;MQ0=0;OQ=2134.00;QD=33.34;SB=-1084.57 GT:DP:GL:GQ 1/1:60:-217.01,-18.08,-0.03:99
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chr20 1007135 rs6057127 G T 713.14 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2164.28;QD=34.35;SB=-1049.45 GT:DP:GL:GQ 1/1:61:-220.04,-18.38,-0.02:99
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chr20 1007373 rs6087132 T C 313.55 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=3;HaplotypeScore=0.48;MQ=59.24;MQ0=0;OQ=2085.36;QD=34.19;SB=-1061.44 GT:DP:GL:GQ 1/1:59:-212.14,-17.77,-0.02:99
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chr20 1008202 rs4813910 C T 819.78 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2685.26;QD=40.08;SB=-1281.72 GT:DP:GL:GQ 1/1:67:-272.12,-20.18,-0.01:99
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chr20 1009469 rs11699771 C T 825.21 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.23;MQ0=0;OQ=2304.58;QD=38.41;SB=-1170.06 GT:DP:GL:GQ 1/1:58:-234.06,-17.47,-0.01:99
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chr20 1009660 rs4813020 C T 693.71 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=1827.57;QD=37.30;SB=-868.64 GT:DP:GL:GQ 1/1:47:-188.85,-14.16,-2.51:99
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chr20 1009777 rs4813021 C T 813.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.38;MQ0=0;OQ=2671.42;QD=39.87;SB=-1150.70 GT:DP:GL:GQ 1/1:67:-270.74,-20.18,-0.02:99
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chr20 1010617 . A G 462.76 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.19;MQ0=0;OQ=753.41;QD=13.22;SB=-362.34 GT:DP:GL:GQ 0/1:57:-95.80,-17.17,-124.18:99
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chr20 1010779 rs6039703 C A 428.20 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=2.32;MQ=59.65;MQ0=0;OQ=2291.70;QD=34.72;SB=-1138.30 GT:DP:GL:GQ 1/1:64:-232.78,-19.28,-0.02:99
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chr20 1011318 rs4813911 G A 699.42 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.38;MQ0=0;OQ=2410.58;QD=40.18;SB=-1172.70 GT:DP:GL:GQ 1/1:60:-244.66,-18.07,-0.01:99
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chr20 1011642 rs6039706 A G 616.03 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.99;MQ0=0;OQ=1608.14;QD=29.78;SB=-673.59 GT:DP:GL:GQ 1/1:52:-164.45,-15.68,-0.05:99
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chr20 1012591 rs989659 C T 812.08 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2721.01;QD=40.01;SB=-1161.70 GT:DP:GL:GQ 1/1:68:-275.70,-20.48,-0.01:99
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chr20 1014687 rs6039734 A G 830.87 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.45;MQ0=0;OQ=2671.76;QD=35.15;SB=-1293.18 GT:DP:GL:GQ 1/1:75:-270.79,-22.59,-0.03:99
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chr20 1014962 rs6032808 G A 628.15 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=2.94;MQ=59.71;MQ0=0;OQ=1237.79;QD=15.67;SB=-549.39 GT:DP:GL:GQ 0/1:78:-150.57,-23.51,-137.20:99
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chr20 1015571 rs6032810 G A 716.53 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=2.10;MQ=59.78;MQ0=0;OQ=1186.32;QD=13.79;SB=-333.32 GT:DP:GL:GQ 0/1:82:-146.62,-24.71,-166.12:99
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chr20 1015700 rs2208007 T G 641.98 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.91;MQ0=0;OQ=743.36;QD=12.39;SB=-296.43 GT:DP:GL:GQ 0/1:60:-95.69,-18.07,-121.78:99
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chr20 1016462 rs1033664 C T 584.62 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.93;MQ=58.76;MQ0=0;OQ=2746.24;QD=40.39;SB=-1173.07 GT:DP:GL:GQ 1/1:68:-278.23,-20.48,-0.02:99
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chr20 1017103 rs6077678 G A 513.26 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.97;MQ0=0;OQ=1363.79;QD=22.00;SB=-700.25 GT:DP:GL:GQ 0/1:62:-158.33,-18.67,-90.91:99
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chr20 1018829 rs11699986 A C 673.30 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=2.32;MQ=59.66;MQ0=0;OQ=938.11;QD=13.80;SB=-292.84 GT:DP:GL:GQ 0/1:67:-117.27,-20.18,-127.80:99
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chr20 1020316 rs11696886 A G 422.88 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=2.82;MQ=57.52;MQ0=0;OQ=1187.14;QD=13.97;SB=-544.19 GT:DP:GL:GQ 0/1:82:-146.70,-24.70,-166.59:99
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chr20 1021919 . G A 241.86 PASS AB=0.38;AC=1;AF=0.50;AN=2;DP=49;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.46;MQ0=0;OQ=1033.93;QD=20.68;SB=-507.13 GT:DP:GL:GQ 0/1:49:-121.44,-14.77,-62.41:99
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chr20 1022241 rs2144776 T C 844.99 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.13;MQ0=0;OQ=2488.58;QD=35.55;SB=-1216.85 GT:DP:GL:GQ 1/1:70:-252.46,-21.08,-0.02:99
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chr20 1023691 rs11696399 G C 760.91 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=1.73;MQ=59.70;MQ0=0;OQ=1249.07;QD=16.22;SB=-549.56 GT:DP:GL:GQ 0/1:77:-151.39,-23.20,-182.88:99
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chr20 1023864 rs11696575 C T 573.67 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1325.42;QD=18.41;SB=-447.94 GT:DP:GL:GQ 0/1:72:-157.52,-21.69,-120.81:99
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chr20 1024484 rs4813922 G A 685.84 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.97;MQ=56.05;MQ0=0;OQ=1038.25;QD=15.97;SB=-456.43 GT:DP:GL:GQ 0/1:63:-126.09,-18.98,-111.51:99
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chr20 1024782 . T A 12.25 ABFilter;DPFilter;Indel;LowQual AB=0.88;AC=1;AF=0.50;AN=2;DP=53;Dels=0.00;HRun=20;HaplotypeScore=8.09;MQ=54.90;MQ0=1;QD=0.19;SB=101.35 GT:DP:GL:GQ 0/1:53:-20.44,-15.96,-178.24:44.82
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chr20 1024810 . C A 0 FDRtranche2.00to10.00+ AB=0.79;AC=1;AF=0.50;AN=2;DP=50;Dels=0.01;HRun=20;HaplotypeScore=25.76;MQ=53.15;MQ0=1;OQ=115.19;QD=1.62;SB=83.27 GT:DP:GL:GQ 0/1:50:-29.56,-14.76,-140.34:99
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chr20 1026662 rs2317426 G T 701.70 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=58.83;MQ0=0;OQ=1643.60;QD=19.57;SB=-691.54 GT:DP:GL:GQ 0/1:83:-192.64,-25.00,-109.25:99
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chr20 1026851 . G A 471.13 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1064.72;QD=15.43;SB=-472.42 GT:DP:GL:GQ 0/1:69:-130.54,-20.78,-132.95:99
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chr20 1027305 rs6032835 G T 790.37 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=1018.17;QD=15.20;SB=-520.26 GT:DP:GL:GQ 0/1:67:-125.28,-20.18,-120.34:99
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chr20 1027678 rs6039805 A G 662.13 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.33;MQ=59.06;MQ0=0;OQ=814.65;QD=11.81;SB=-338.89 GT:DP:GL:GQ 0/1:66:-104.65,-19.90,-134.55:99
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chr20 1027945 rs4577346 G A 309.64 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=59.42;MQ0=0;OQ=3153.86;QD=39.92;SB=-1425.34 GT:DP:GL:GQ 1/1:79:-318.99,-23.80,-0.02:99
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chr20 1028349 rs55726113 G A 642.13 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=59.36;MQ0=0;OQ=1316.79;QD=18.29;SB=-518.67 GT:DP:GL:GQ 0/1:71:-156.35,-21.38,-119.01:99
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chr20 1028364 rs56237262 G A 618.91 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.40;MQ0=0;OQ=1408.08;QD=18.29;SB=-591.96 GT:DP:GL:GQ 0/1:77:-167.28,-23.19,-132.17:99
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chr20 1028460 rs55878704 C T 580.45 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.06;MQ0=0;OQ=1220.12;QD=17.18;SB=-558.57 GT:DP:GL:GQ 0/1:67:-145.48,-20.18,-110.71:99
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chr20 1028821 . A G 19.50 DPFilter;LowQual;SnpCluster AB=0.60;AC=1;AF=0.50;AN=2;DP=42;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=50.01;MQ0=0;QD=0.30;SB=12.23 GT:DP:GL:GQ 0/1:42:-17.88,-12.65,-145.78:52.29
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chr20 1028826 . G C 97.35 SnpCluster AB=0.56;AC=1;AF=0.50;AN=2;DP=43;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=48.91;MQ0=0;QD=1.47;SB=-31.73 GT:DP:GL:GQ 0/1:43:-25.98,-12.96,-157.80:99
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chr20 1028828 . A T 48.44 LowQual;SnpCluster AB=0.59;AC=1;AF=0.50;AN=2;DP=46;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=49.27;MQ0=0;QD=0.71;SB=-18.57 GT:DP:GL:GQ 0/1:46:-21.98,-13.86,-151.06:81.27
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chr20 1029648 . C T 320.13 PASS AB=0.46;AC=1;AF=0.50;AN=2;DP=55;Dels=0.00;HRun=1;HaplotypeScore=2.02;MQ=58.82;MQ0=0;OQ=975.75;QD=16.54;SB=-385.90 GT:DP:GL:GQ 0/1:55:-117.43,-16.57,-92.13:99
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chr20 1029660 rs6077727 T C 409.54 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=2.87;MQ=58.36;MQ0=0;OQ=1283.87;QD=21.76;SB=-660.77 GT:DP:GL:GQ 1/1:41:-132.02,-12.37,-0.04:99
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chr20 1029872 rs11699627 T A 243.61 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=4;HaplotypeScore=1.16;MQ=58.93;MQ0=0;OQ=864.88;QD=11.69;SB=-420.46 GT:DP:GL:GQ 0/1:72:-111.46,-21.68,-160.14:99
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chr20 1030454 rs2024856 T C 805.25 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3092.23;QD=35.96;SB=-1456.94 GT:DP:GL:GQ 1/1:86:-312.83,-25.90,-0.03:99
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chr20 1031089 rs2317428 C T 561.74 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.58;MQ0=0;OQ=4044.71;QD=40.86;SB=-1536.72 GT:DP:GL:GQ 1/1:98:-403.47,-29.52,-0.02:99
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chr20 1031632 rs2317429 T C 729.36 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1962.14;QD=33.83;SB=-980.94 GT:DP:GL:GQ 1/1:57:-199.82,-17.17,-0.02:99
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chr20 1032023 rs11698573 G A 682.25 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.73;MQ=59.74;MQ0=0;OQ=868.85;QD=12.07;SB=-348.33 GT:DP:GL:GQ 0/1:70:-111.26,-21.09,-145.08:99
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chr20 1032076 . T C 279.98 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=71;Dels=0.00;HRun=1;HaplotypeScore=2.71;MQ=59.74;MQ0=0;OQ=1030.76;QD=14.32;SB=-418.27 GT:DP:GL:GQ 0/1:71:-127.77,-21.41,-126.05:99
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chr20 1032425 rs11696674 A G 768.38 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.62;MQ0=0;OQ=839.26;QD=13.99;SB=-425.10 GT:DP:GL:GQ 0/1:58:-104.69,-17.48,-113.64:99
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chr20 1032659 rs4344980 C T 703.60 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=80.23;MQ0=0;OQ=2585.04;QD=40.39;SB=-1282.06 GT:DP:GL:GQ 1/1:64:-262.10,-19.28,-0.01:99
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chr20 1032704 rs4813929 T C 408.98 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=2;HaplotypeScore=3.93;MQ=105.24;MQ0=0;OQ=1088.63;QD=16.75;SB=-462.58 GT:DP:GL:GQ 0/1:64:-131.42,-19.28,-114.19:99
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chr20 1032717 rs4344981 C G 363.92 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=4.71;MQ=106.86;MQ0=0;OQ=1322.06;QD=18.89;SB=-573.44 GT:DP:GL:GQ 0/1:69:-156.28,-20.79,-141.95:99
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chr20 1032969 rs6039856 T C 724.39 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.55;MQ0=0;OQ=2391.08;QD=35.16;SB=-1139.75 GT:DP:GL:GQ 1/1:67:-242.72,-20.18,-0.03:99
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chr20 1033240 rs6039857 A G 380.76 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=3.91;MQ=56.35;MQ0=0;OQ=971.01;QD=17.34;SB=-351.95 GT:DP:GL:GQ 0/1:54:-116.65,-16.27,-87.55:99
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chr20 1033391 . G C 123.05 PASS AB=0.42;AC=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=59.19;MQ0=0;OQ=1137.29;QD=21.87;SB=-390.91 GT:DP:GL:GQ 0/1:51:-132.38,-15.37,-91.69:99
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chr20 1033746 . A C 209.63 PASS AB=0.51;AC=1;AF=0.50;AN=2;DP=59;Dels=0.00;HRun=1;HaplotypeScore=3.63;MQ=59.34;MQ0=0;OQ=896.64;QD=14.23;SB=-462.75 GT:DP:GL:GQ 0/1:59:-110.72,-17.77,-101.55:99
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chr20 1034138 rs6039863 C T 409.21 PASS AB=0.64;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=2;HaplotypeScore=1.73;MQ=60.00;MQ0=0;OQ=792.77;QD=11.01;SB=-301.23 GT:DP:GL:GQ 0/1:70:-103.66,-21.10,-143.86:99
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chr20 1034753 rs6039867 C G 644.51 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.25;MQ0=0;OQ=2627.20;QD=42.37;SB=-1301.44 GT:DP:GL:GQ 1/1:61:-266.33,-18.38,-0.02:99
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chr20 1037340 . C G 178.80 PASS AB=0.61;AC=1;AF=0.50;AN=2;DP=62;Dels=0.00;HRun=1;HaplotypeScore=2.03;MQ=59.64;MQ0=0;OQ=851.04;QD=13.30;SB=-123.48 GT:DP:GL:GQ 0/1:62:-107.08,-18.70,-147.65:99
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chr20 1037388 . G C 114.51 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=62;Dels=0.00;HRun=2;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=1203.07;QD=19.40;SB=-532.71 GT:DP:GL:GQ 0/1:62:-142.28,-18.68,-126.02:99
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chr20 1037961 rs6077755 G T 751.58 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1080.18;QD=15.65;SB=-424.47 GT:DP:GL:GQ 0/1:69:-132.08,-20.78,-119.11:99
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chr20 1038679 rs6077759 A G 746.91 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=676.16;QD=12.29;SB=-285.43 GT:DP:GL:GQ 0/1:55:-87.47,-16.57,-118.39:99
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chr20 1038779 rs6039902 T C 678.18 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1933.09;QD=31.18;SB=-931.51 GT:DP:GL:GQ 1/1:60:-196.94,-18.09,-0.05:99
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chr20 1038785 rs6039903 A T 525.82 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.94;MQ=60.00;MQ0=0;OQ=2438.96;QD=36.95;SB=-1142.38 GT:DP:GL:GQ 1/1:66:-247.50,-19.88,-0.02:99
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chr20 1040456 rs6077768 C T 499.71 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=1;HaplotypeScore=1.80;MQ=59.77;MQ0=0;OQ=1397.49;QD=17.47;SB=-711.76 GT:DP:GL:GQ 0/1:79:-166.83,-23.80,-138.65:99
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chr20 1040561 rs6077769 T C 658.92 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.72;MQ0=0;OQ=1228.29;QD=15.35;SB=-462.61 GT:DP:GL:GQ 0/1:80:-150.21,-24.10,-159.45:99
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chr20 1040806 rs6039915 T C 770.18 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1238.01;QD=15.28;SB=-519.29 GT:DP:GL:GQ 0/1:77:-150.28,-23.19,-147.45:99
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chr20 1041265 rs6074131 T A 4.67 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=6;HaplotypeScore=0.73;MQ=59.01;MQ0=0;OQ=1338.60;QD=15.75;SB=-684.10 GT:DP:GL:GQ 0/1:82:-161.84,-24.70,-147.30:99
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chr20 1041310 rs6077771 C T 426.98 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.73;MQ=59.64;MQ0=0;OQ=1333.15;QD=20.83;SB=-484.50 GT:DP:GL:GQ 0/1:62:-155.28,-18.68,-78.43:99
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chr20 1041562 rs6077773 A G 331.53 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.69;MQ0=0;OQ=790.46;QD=13.17;SB=-65.60 GT:DP:GL:GQ 0/1:58:-99.80,-17.47,-116.93:99
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chr20 1041584 rs6077774 T A 0.59 FDRtranche2.00to10.00 AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=8;HaplotypeScore=11.78;MQ=58.55;MQ0=0;OQ=1050.06;QD=14.19;SB=-347.54 GT:DP:GL:GQ 0/1:69:-129.08,-20.79,-117.06:99
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chr20 1041839 rs61591758 A C 456.45 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.54;MQ0=0;OQ=449.14;QD=8.98;SB=-104.79 GT:DP:GL:GQ 0/1:42:-60.85,-12.66,-87.12:99
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chr20 1042346 rs6077779 G T 1.63 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=7;HaplotypeScore=0.73;MQ=69.92;MQ0=0;OQ=864.33;QD=15.72;SB=-355.43 GT:DP:GL:GQ 0/1:54:-105.99,-16.27,-80.76:99
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chr20 1042698 rs6032877 C T 580.45 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=2.20;MQ=59.14;MQ0=0;OQ=1424.46;QD=18.74;SB=-623.37 GT:DP:GL:GQ 0/1:73:-167.75,-22.02,-92.97:99
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chr20 1042857 rs6039922 C T 761.82 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=51.33;MQ0=0;OQ=890.86;QD=15.91;SB=-381.13 GT:DP:GL:GQ 0/1:54:-108.64,-16.27,-96.09:99
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chr20 1042892 rs56761356 C T 628.98 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.10;MQ=49.67;MQ0=0;OQ=973.29;QD=15.70;SB=-366.35 GT:DP:GL:GQ 0/1:59:-118.40,-17.78,-95.00:99
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chr20 1043396 rs6074136 C G 146.71 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;HRun=0;HaplotypeScore=1.72;MQ=44.92;MQ0=1;OQ=440.36;QD=33.87;SB=-94.94 GT:DP:GL:GQ 1/1:11:-47.63,-3.32,-0.01:33.11
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chr20 1043700 rs6077787 T C 290.44 PASS AB=0.36;AC=1;AF=0.50;AN=2;DB;DP=20;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=34.23;MQ0=2;OQ=317.81;QD=12.71;SB=-0.97 GT:DP:GL:GQ 0/1:20:-41.09,-6.03,-27.73:99
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chr20 1043903 rs13043414 C G 40.06 ABFilter;HARD_TO_VALIDATE;LowQual AB=0.89;AC=1;AF=0.50;AN=2;DB;DP=34;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=25.75;MQ0=10;QD=0.61;SB=-43.44 GT:DP:GL:GQ 0/1:34:-17.55,-10.26,-118.60:72.90
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chr20 1043917 rs55638735 A C 43.78 ABFilter;HARD_TO_VALIDATE;LowQual AB=0.80;AC=1;AF=0.50;AN=2;DB;DP=28;Dels=0.00;HRun=0;HaplotypeScore=2.33;MQ=21.38;MQ0=13;QD=0.63;SB=-10.00 GT:DP:GL:GQ 0/1:28:-16.10,-8.44,-78.40:76.62
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chr20 1043980 rs6074139 C G 158.75 PASS AB=0.66;AC=1;AF=0.50;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=4.75;MQ=38.45;MQ0=16;OQ=617.65;QD=8.13;SB=-273.53 GT:DP:GL:GQ 0/1:45:-78.61,-13.56,-113.97:99
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chr20 1043994 rs55751955 A C 219.68 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=2.86;MQ=43.97;MQ0=11;OQ=487.78;QD=6.25;SB=-53.83 GT:DP:GL:GQ 0/1:51:-67.43,-15.37,-112.25:99
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chr20 1044116 rs6077792 G T 594.66 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.48;MQ0=0;OQ=1313.84;QD=19.91;SB=-546.31 GT:DP:GL:GQ 0/1:66:-154.55,-19.88,-87.16:99
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chr20 1044396 rs6077796 G T 0 FDRtranche2.00to10.00+ AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.03;HRun=15;HaplotypeScore=24.75;MQ=55.54;MQ0=0;OQ=1058.92;QD=14.71;SB=-477.01 GT:DP:GL:GQ 0/1:62:-127.25,-18.08,-83.29:99
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chr20 1044536 rs6039940 C T 645.65 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=52.36;MQ0=1;OQ=748.81;QD=13.37;SB=-389.86 GT:DP:GL:GQ 0/1:55:-94.74,-16.58,-105.39:99
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chr20 1044630 rs4813028 T C 302.38 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=3;HaplotypeScore=1.84;MQ=66.27;MQ0=0;OQ=963.34;QD=16.90;SB=-476.23 GT:DP:GL:GQ 0/1:55:-116.18,-16.57,-93.28:99
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chr20 1044924 rs2092370 G A 317.47 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=87;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=56.98;MQ0=0;OQ=1468.01;QD=16.31;SB=-616.61 GT:DP:GL:GQ 0/1:87:-176.29,-26.20,-160.03:99
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chr20 1045609 rs4813030 T C 792.30 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=58.46;MQ0=0;OQ=1162.70;QD=14.18;SB=-412.97 GT:DP:GL:GQ 0/1:82:-144.26,-24.71,-153.39:99
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chr20 1045992 . C T 0 FDRtranche2.00to10.00+ AB=0.75;AC=1;AF=0.50;AN=2;DP=47;Dels=0.03;HRun=15;HaplotypeScore=16.89;MQ=56.83;MQ0=0;OQ=137.84;QD=2.22;SB=34.61 GT:DP:GL:GQ 0/1:47:-30.63,-13.56,-130.15:99
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chr20 1046486 rs6074148 C T 486.42 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=2;HaplotypeScore=2.46;MQ=58.46;MQ0=0;OQ=924.61;QD=15.16;SB=-461.41 GT:DP:GL:GQ 0/1:57:-112.92,-17.17,-102.68:99
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chr20 1046825 rs1018408 C T 630.60 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=2542.38;QD=37.39;SB=-685.93 GT:DP:GL:GQ 1/1:65:-257.85,-19.59,-0.03:99
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chr20 1046954 rs7348188 C G 411.82 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=2;HaplotypeScore=0.47;MQ=60.00;MQ0=0;OQ=1413.30;QD=17.45;SB=-682.34 GT:DP:GL:GQ 0/1:79:-168.45,-23.83,-156.83:99
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chr20 1047025 . A G 417.74 PASS AB=0.52;AC=1;AF=0.50;AN=2;DP=41;Dels=0.00;HRun=0;HaplotypeScore=1.93;MQ=59.34;MQ0=0;OQ=558.91;QD=13.31;SB=-283.45 GT:DP:GL:GQ 0/1:41:-71.53,-12.35,-79.79:99
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chr20 1047199 rs2072964 A G 737.74 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1361.70;QD=31.67;SB=-614.27 GT:DP:GL:GQ 1/1:41:-139.78,-12.35,-0.02:99
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chr20 1047329 rs2072962 A G 440.87 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.25;MQ0=0;OQ=911.78;QD=29.41;SB=-336.38 GT:DP:GL:GQ 1/1:29:-94.79,-8.75,-0.03:87.20
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chr20 1047523 rs1803415 T G 607.93 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=58.95;MQ0=0;OQ=1454.79;QD=33.06;SB=-610.98 GT:DP:GL:GQ 1/1:43:-149.08,-12.95,-0.02:99
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chr20 1047666 rs2072961 G C 531.93 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.32;MQ0=0;OQ=1399.90;QD=41.17;SB=-582.97 GT:DP:GL:GQ 1/1:34:-143.59,-10.25,-0.01:99
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chr20 1047903 rs6039969 G C 28.27 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=3;HaplotypeScore=4.05;MQ=59.60;MQ0=0;OQ=2450.11;QD=42.24;SB=-1145.03 GT:DP:GL:GQ 1/1:57:-248.61,-17.17,-0.02:99
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chr20 1048085 rs55761410 C T 476 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=3.25;MQ=58.52;MQ0=0;OQ=892.91;QD=15.67;SB=-424.98 GT:DP:GL:GQ 0/1:56:-109.46,-16.89,-86.29:99
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chr20 1048403 rs3787572 A C 212.11 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=59.61;MQ0=0;OQ=2074.50;QD=35.16;SB=-614.06 GT:DP:GL:GQ 1/1:59:-211.06,-17.77,-0.02:99
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chr20 1048669 rs3787573 A G 749.95 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=77.82;MQ0=0;OQ=859.51;QD=11.77;SB=-320.11 GT:DP:GL:GQ 0/1:71:-110.63,-21.39,-155.03:99
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chr20 1049116 . G A 431.14 PASS AB=0.59;AC=1;AF=0.50;AN=2;DP=69;Dels=0.00;HRun=0;HaplotypeScore=2.22;MQ=59.73;MQ0=0;OQ=952.07;QD=13.60;SB=-445.34 GT:DP:GL:GQ 0/1:69:-119.27,-20.78,-145.84:99
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chr20 1049785 . T A 1.34 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;HRun=5;HaplotypeScore=8.47;MQ=60.00;MQ0=0;OQ=2601.12;QD=34.68;SB=-1124.09 GT:DP:GL:GQ 1/1:74:-270.86,-22.29,-7.16:99
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chr20 1050532 rs2268065 G A 820.05 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.46;MQ0=0;OQ=3399.70;QD=39.53;SB=-1427.36 GT:DP:GL:GQ 1/1:84:-338.97,-25.30,-0.02:99
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chr20 1052297 rs6032895 G T 778.36 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.12;MQ0=0;OQ=1093.77;QD=15.85;SB=-414.14 GT:DP:GL:GQ 0/1:67:-132.84,-20.18,-110.34:99
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chr20 1053144 rs6040009 C T 344.46 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=73.25;MQ0=0;OQ=2628.01;QD=38.65;SB=-1083.47 GT:DP:GL:GQ 1/1:66:-266.40,-19.88,-0.02:99
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chr20 1054944 rs6040022 T G 732.58 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=2385.95;QD=34.08;SB=-1132.63 GT:DP:GL:GQ 1/1:68:-242.20,-20.48,-0.02:99
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chr20 1056122 rs6514113 C T 670.38 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=1.46;MQ=60.00;MQ0=0;OQ=1130.75;QD=18.24;SB=-581.10 GT:DP:GL:GQ 0/1:62:-135.04,-18.68,-94.64:99
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chr20 1056262 rs6040024 C G 816.63 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2308.82;QD=35.52;SB=-853.05 GT:DP:GL:GQ 1/1:60:-234.52,-18.11,-0.05:99
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chr20 1057672 rs56273960 C T 651.47 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=1.91;MQ=59.42;MQ0=1;OQ=1028.60;QD=15.35;SB=-517.05 GT:DP:GL:GQ 0/1:65:-125.73,-19.59,-115.81:99
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chr20 1057872 rs6040031 G C 696.22 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.10;MQ=58.15;MQ0=0;OQ=2700.11;QD=40.91;SB=-1298.66 GT:DP:GL:GQ 1/1:64:-273.62,-19.29,-0.03:99
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chr20 1058772 rs2284374 G A 712.97 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.47;MQ=59.68;MQ0=0;OQ=1075.94;QD=15.15;SB=-543.69 GT:DP:GL:GQ 0/1:70:-131.96,-21.08,-140.16:99
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chr20 1059215 rs2284373 G T 512.96 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=92;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.19;MQ0=0;OQ=1044.12;QD=11.35;SB=-407.36 GT:DP:GL:GQ 0/1:92:-135.41,-27.72,-180.59:99
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chr20 1059614 rs2143226 T C 493.86 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=1;HaplotypeScore=1.91;MQ=59.47;MQ0=0;OQ=812.89;QD=11.45;SB=-416.82 GT:DP:GL:GQ 0/1:69:-105.37,-20.80,-152.60:99
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chr20 1059743 rs11699188 A G 436.38 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=3.19;MQ=59.69;MQ0=0;OQ=787.64;QD=13.13;SB=-254.97 GT:DP:GL:GQ 0/1:55:-98.64,-16.59,-87.88:99
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chr20 1059874 rs2284372 C T 690.34 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.49;MQ0=0;OQ=3355.95;QD=40.93;SB=-1418.40 GT:DP:GL:GQ 1/1:82:-334.60,-24.70,-0.02:99
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chr20 1061612 rs11698066 G T 0 FDRtranche2.00to10.00+ AB=0.80;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=15;HaplotypeScore=10.04;MQ=139.97;MQ0=0;OQ=82.05;QD=0.97;SB=68.36 GT:DP:GL:GQ 0/1:64:-30.77,-19.29,-178.65:99
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chr20 1061859 rs6040044 G C 619.35 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.42;MQ0=0;OQ=1092.87;QD=17.63;SB=-476.83 GT:DP:GL:GQ 0/1:61:-130.96,-18.39,-123.30:99
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chr20 1061891 rs4553882 G A 289.53 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=3;HaplotypeScore=0.16;MQ=55.96;MQ0=0;OQ=1145.74;QD=17.36;SB=-446.81 GT:DP:GL:GQ 0/1:64:-137.14,-19.28,-108.64:99
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chr20 1062212 . A T 0 FDRtranche2.00to10.00+ AB=0.78;AC=1;AF=0.50;AN=2;DP=18;Dels=0.00;HRun=16;HaplotypeScore=6.91;MQ=43.02;MQ0=0;OQ=61.56;QD=3.42;SB=5.04 GT:DP:GL:GQ 0/1:18:-14.86,-5.42,-51.18:94.39
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chr20 1062214 . T A 27.40 LowQual AB=0.69;AC=1;AF=0.50;AN=2;DP=12;Dels=0.00;HRun=0;HaplotypeScore=4.91;MQ=45.02;MQ0=0;QD=2.11;SB=-37.37 GT:DP:GL:GQ 0/1:12:-9.64,-3.62,-34.01:60.22
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chr20 1063529 rs4813939 A G 562.72 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1283.77;QD=29.86;SB=-476.26 GT:DP:GL:GQ 1/1:39:-131.99,-11.75,-0.02:99
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chr20 1063619 . C T 355.68 PASS AB=0.50;AC=1;AF=0.50;AN=2;DP=39;Dels=0.00;HRun=0;HaplotypeScore=1.53;MQ=59.42;MQ0=0;OQ=629.24;QD=15.73;SB=-250.24 GT:DP:GL:GQ 0/1:39:-77.96,-11.75,-62.90:99
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chr20 1063681 rs45443791 C T 457.20 PASS AB=0.61;AC=1;AF=0.50;AN=2;DB;DP=27;Dels=0.00;HRun=0;HaplotypeScore=2.36;MQ=57.88;MQ0=0;OQ=287.04;QD=9.26;SB=-168.64 GT:DP:GL:GQ 0/1:27:-40.12,-8.14,-56.76:99
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chr20 1064429 rs6077860 A C 587.84 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=95;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=1562.65;QD=16.11;SB=-725.52 GT:DP:GL:GQ 0/1:95:-188.17,-28.62,-137.62:99
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chr20 1064799 rs6514115 G A 710.89 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=90;Dels=0.00;HRun=1;HaplotypeScore=0.95;MQ=60.00;MQ0=0;OQ=1296.53;QD=14.41;SB=-527.47 GT:DP:GL:GQ 0/1:90:-160.04,-27.10,-187.76:99
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chr20 1064913 . T C 18.63 ABFilter;DPFilter;LowQual AB=0.80;AC=1;AF=0.50;AN=2;DP=39;Dels=0.00;HRun=1;HaplotypeScore=2.54;MQ=59.58;MQ0=0;QD=0.42;SB=80.28 GT:DP:GL:GQ 0/1:39:-16.89,-11.75,-134.44:51.41
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chr20 1064915 . G C 2.59 PASS AB=0.69;AC=1;AF=0.50;AN=2;DP=43;Dels=0.00;HRun=2;HaplotypeScore=4.29;MQ=59.63;MQ0=0;OQ=354.78;QD=7.10;SB=80.28 GT:DP:GL:GQ 0/1:43:-51.75,-12.99,-118.63:99
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chr20 1066003 rs4142353 T A 577.92 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.28;MQ0=0;OQ=3144.60;QD=37.44;SB=-1555.32 GT:DP:GL:GQ 1/1:84:-318.07,-25.30,-0.02:99
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chr20 1066399 rs6040066 T G 679.90 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=2774.94;QD=35.13;SB=-1405.17 GT:DP:GL:GQ 1/1:78:-281.10,-23.49,-0.02:99
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chr20 1067263 rs4289256 A G 295.82 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=4.80;MQ=59.12;MQ0=0;OQ=2096.79;QD=30.39;SB=-883.47 GT:DP:GL:GQ 1/1:66:-213.32,-19.90,-0.06:99
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chr20 1067692 rs8117499 G T 416.92 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=2.07;MQ=58.74;MQ0=0;OQ=1275.11;QD=17.23;SB=-317.05 GT:DP:GL:GQ 0/1:73:-152.78,-21.99,-112.64:99
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chr20 1068222 rs11697070 A C 520.31 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.48;MQ0=0;OQ=532.49;QD=12.10;SB=-260.80 GT:DP:GL:GQ 0/1:43:-69.49,-12.95,-83.13:99
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chr20 1069939 . C T 401.64 PASS AB=0.60;AC=1;AF=0.50;AN=2;DP=81;Dels=0.00;HRun=0;HaplotypeScore=1.89;MQ=59.43;MQ0=0;OQ=1024.06;QD=12.64;SB=-532.07 GT:DP:GL:GQ 0/1:81:-130.09,-24.40,-180.49:99
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chr20 1070951 rs2317431 C T 584.73 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.47;MQ=63.18;MQ0=1;OQ=2626.67;QD=39.20;SB=-1235.15 GT:DP:GL:GQ 1/1:66:-266.27,-19.88,-0.02:99
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chr20 1072200 rs6040108 G A 647.80 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.57;MQ0=0;OQ=1100.65;QD=16.19;SB=-568.06 GT:DP:GL:GQ 0/1:66:-133.23,-19.88,-116.62:99
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chr20 1072560 rs1989400 C G 304.16 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=3.00;MQ=59.53;MQ0=0;OQ=1137.32;QD=18.34;SB=-391.69 GT:DP:GL:GQ 0/1:59:-134.81,-17.80,-104.44:99
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chr20 1072847 rs11699981 T G 338.15 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.54;MQ0=1;OQ=1001.64;QD=15.18;SB=-436.72 GT:DP:GL:GQ 0/1:62:-122.12,-18.68,-102.85:99
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chr20 1073036 rs6077895 A T 731.81 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.66;MQ0=0;OQ=2554.89;QD=38.13;SB=-1135.55 GT:DP:GL:GQ 1/1:67:-259.09,-20.18,-0.01:99
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chr20 1073167 rs6077896 T C 14.50 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;HRun=1;HaplotypeScore=6.10;MQ=59.54;MQ0=0;OQ=2821.11;QD=31.00;SB=-1225.97 GT:DP:GL:GQ 1/1:87:-285.76,-26.23,-0.07:99
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chr20 1073924 rs2179450 T C 745 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.74;MQ0=0;OQ=1206.66;QD=13.56;SB=-330.25 GT:DP:GL:GQ 0/1:88:-150.46,-26.51,-180.15:99
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chr20 1074002 rs2179449 C T 813.22 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.99;MQ0=0;OQ=2388.46;QD=39.81;SB=-1137.05 GT:DP:GL:GQ 1/1:60:-242.44,-18.07,-0.01:99
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chr20 1074040 rs4813940 A G 423.07 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.10;MQ0=0;OQ=2350.42;QD=34.06;SB=-1123.73 GT:DP:GL:GQ 1/1:66:-238.65,-19.88,-0.02:99
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chr20 1074724 rs1883522 G A 745.55 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.69;MQ0=0;OQ=1164.89;QD=15.53;SB=-574.06 GT:DP:GL:GQ 0/1:75:-142.36,-22.59,-145.14:99
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chr20 1074745 rs6040122 C G 751.42 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.69;MQ0=0;OQ=1162.34;QD=15.71;SB=-561.17 GT:DP:GL:GQ 0/1:74:-141.83,-22.31,-171.41:99
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chr20 1075594 rs2317432 A G 603.67 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=1.67;MQ=59.24;MQ0=0;OQ=2113.87;QD=34.65;SB=-812.16 GT:DP:GL:GQ 1/1:60:-214.99,-18.07,-0.02:99
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chr20 1077803 rs6032947 T C 737.29 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1301.71;QD=17.59;SB=-535.98 GT:DP:GL:GQ 0/1:74:-155.74,-22.29,-124.84:99
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chr20 1077862 . T C 467.81 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1100.52;QD=14.48;SB=-484.09 GT:DP:GL:GQ 0/1:74:-135.62,-22.29,-146.70:99
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chr20 1078536 rs6077918 C T 15.92 PASS AB=0.65;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=0;HaplotypeScore=4.79;MQ=46.92;MQ0=0;OQ=579.19;QD=5.22;SB=83.19 GT:DP:GL:GQ 0/1:88:-87.74,-26.53,-209.42:99
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chr20 1078627 rs11697802 C T 5.03 PASS AB=0.83;AC=1;AF=0.50;AN=2;DB;DP=122;Dels=0.00;HRun=0;HaplotypeScore=5.27;MQ=52.75;MQ0=0;OQ=434.71;QD=3.04;SB=-40.95 GT:DP:GL:GQ 0/1:122:-83.52,-36.76,-350.59:99
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chr20 1078782 rs6077921 T C 613.95 PASS AB=0.36;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.82;MQ=48.85;MQ0=0;OQ=1175.97;QD=14.17;SB=-383.25 GT:DP:GL:GQ 0/1:68:-141.37,-20.49,-109.61:99
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chr20 1079119 rs6040155 A G 410.80 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=1;HaplotypeScore=4.66;MQ=59.29;MQ0=0;OQ=756.52;QD=12.82;SB=-278.40 GT:DP:GL:GQ 0/1:57:-96.11,-17.17,-118.66:99
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chr20 1079253 . G T 0.22 FDRtranche2.00to10.00+ AB=0.73;AC=1;AF=0.50;AN=2;DP=65;Dels=0.00;HRun=2;HaplotypeScore=3.62;MQ=58.91;MQ0=0;OQ=149.88;QD=1.85;SB=125.40 GT:DP:GL:GQ 0/1:65:-37.87,-19.59,-181.00:99
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chr20 1110615 rs1217 G A 826.83 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.35;MQ0=0;OQ=2773.06;QD=39.06;SB=-1126.64 GT:DP:GL:GQ 1/1:70:-280.91,-21.09,-0.02:99
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chr20 1110696 rs6040355 A T 499.78 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=0.83;MQ=59.63;MQ0=0;OQ=2430.87;QD=38.59;SB=-904.35 GT:DP:GL:GQ 1/1:63:-246.68,-18.97,-0.01:99
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chr20 1113593 rs13036311 T C 2.96 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=57.38;MQ0=0;OQ=395.45;QD=21.97;SB=-10.00 GT:DP:GL:GQ 1/1:14:-43.15,-4.23,-0.02:42.09
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chr20 1118754 . T C 16.52 ABFilter;LowQual AB=0.80;AC=1;AF=0.50;AN=2;DP=31;Dels=0.00;HRun=1;HaplotypeScore=2.00;MQ=56.31;MQ0=3;QD=0.36;SB=-0.56 GT:DP:GL:GQ 0/1:31:-14.27,-9.34,-109.99:49.26
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chr20 1119502 rs4813963 G A 744.34 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2434.45;QD=38.04;SB=-1222.62 GT:DP:GL:GQ 1/1:61:-247.05,-18.38,-0.02:99
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chr20 1119788 rs6078095 G A 764.28 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=59.00;MQ0=0;OQ=1140.09;QD=17.54;SB=-541.76 GT:DP:GL:GQ 0/1:64:-136.57,-19.28,-107.17:99
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chr20 1120794 rs4813049 A G 148.42 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=2;HaplotypeScore=1.58;MQ=50.38;MQ0=0;OQ=1462.89;QD=28.13;SB=-733.75 GT:DP:GL:GQ 1/1:46:-149.91,-13.87,-0.04:99
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chr20 1121900 rs6033060 T G 744.96 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.71;MQ0=0;OQ=2253.04;QD=35.20;SB=-1074.11 GT:DP:GL:GQ 1/1:64:-228.91,-19.28,-0.02:99
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chr20 1122157 . C T 400.82 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.75;MQ0=0;OQ=1440.42;QD=19.21;SB=-650.69 GT:DP:GL:GQ 0/1:75:-169.92,-22.59,-122.15:99
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chr20 1123527 rs6033064 T C 609.12 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=1.89;MQ=58.95;MQ0=0;OQ=2153.96;QD=32.64;SB=-1097.98 GT:DP:GL:GQ 1/1:63:-219.02,-18.98,-0.04:99
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chr20 1123894 rs6078104 G A 18.51 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.01;HRun=0;HaplotypeScore=13.75;MQ=166.55;MQ0=0;OQ=1030.53;QD=14.51;SB=-368.08 GT:DP:GL:GQ 0/1:68:-126.83,-20.49,-124.97:99
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chr20 1124762 rs55658568 C G 598.59 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=1.97;MQ=59.70;MQ0=0;OQ=1377.47;QD=18.12;SB=-638.87 GT:DP:GL:GQ 0/1:73:-166.71,-25.67,-144.86:99
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chr20 1124947 rs56362317 G A 540.46 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=1106.51;QD=18.14;SB=-473.04 GT:DP:GL:GQ 0/1:60:-132.01,-18.07,-101.95:99
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chr20 1125029 rs6074266 A T 711.38 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.72;MQ0=0;OQ=778.60;QD=11.62;SB=-337.57 GT:DP:GL:GQ 0/1:64:-100.43,-19.28,-137.01:99
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chr20 1125199 rs6078110 A G 501.98 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=1;HaplotypeScore=3.18;MQ=60.00;MQ0=0;OQ=1272.46;QD=17.20;SB=-559.61 GT:DP:GL:GQ 0/1:74:-152.82,-22.29,-131.96:99
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chr20 1125935 rs6104732 T C 458.34 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.20;MQ0=1;OQ=410.55;QD=11.10;SB=-176.97 GT:DP:GL:GQ 0/1:35:-54.88,-10.54,-81.06:99
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chr20 1125969 rs6104733 T C 499 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=33;Dels=0.00;HRun=0;HaplotypeScore=0.10;MQ=55.64;MQ0=1;OQ=320.55;QD=9.16;SB=-174.94 GT:DP:GL:GQ 0/1:33:-45.29,-9.95,-75.67:99
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chr20 1126409 rs9789836 A G 240.25 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=29;Dels=0.00;HRun=0;HaplotypeScore=4.60;MQ=58.73;MQ0=0;OQ=412.43;QD=12.50;SB=-179.64 GT:DP:GL:GQ 0/1:29:-53.27,-8.74,-49.59:99
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chr20 1127082 rs7269259 C T 321.15 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=5.19;MQ=59.42;MQ0=0;OQ=1494.81;QD=18.92;SB=-717.00 GT:DP:GL:GQ 0/1:78:-178.43,-25.67,-118.41:99
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chr20 1127133 rs55924053 C T 683.07 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=59.19;MQ0=0;OQ=922.66;QD=16.19;SB=-459.45 GT:DP:GL:GQ 0/1:57:-112.73,-17.18,-93.16:99
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chr20 1127237 rs17778888 C T 438.88 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=1;HaplotypeScore=4.75;MQ=60.00;MQ0=0;OQ=1075.26;QD=14.73;SB=-538.06 GT:DP:GL:GQ 0/1:69:-131.61,-20.80,-118.50:99
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chr20 1127659 rs59098165 A G 553.18 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.73;MQ=59.60;MQ0=0;OQ=1044.37;QD=18.32;SB=-407.28 GT:DP:GL:GQ 0/1:56:-124.59,-16.87,-89.52:99
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chr20 1128222 rs6078117 A G 829.64 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2657.32;QD=35.43;SB=-1321.59 GT:DP:GL:GQ 1/1:74:-269.34,-22.29,-0.02:99
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chr20 1128929 . T A 52.82 PASS AB=0.32;AC=1;AF=0.50;AN=2;DP=77;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=1652.86;QD=21.47;SB=-700.61 GT:DP:GL:GQ 0/1:77:-191.77,-23.20,-94.11:99
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chr20 1129943 rs6134179 G T 704.22 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=57.99;MQ0=0;OQ=1263.53;QD=18.58;SB=-455.22 GT:DP:GL:GQ 0/1:68:-150.12,-20.48,-101.12:99
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chr20 1130138 rs35965495 G C 318.15 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=3.58;MQ=59.44;MQ0=0;OQ=1278.80;QD=17.28;SB=-399.91 GT:DP:GL:GQ 0/1:70:-152.26,-21.10,-151.60:99
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chr20 1130173 rs6074272 G A 728.24 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2567.00;QD=38.89;SB=-1231.01 GT:DP:GL:GQ 1/1:64:-260.30,-19.28,-0.02:99
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chr20 1130565 rs6074273 G A 642.55 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=1.14;MQ=59.48;MQ0=0;OQ=1457.32;QD=17.99;SB=-646.74 GT:DP:GL:GQ 0/1:78:-172.52,-23.51,-112.95:99
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chr20 1131138 rs9789799 G T 486.74 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.70;MQ0=0;OQ=1374.82;QD=18.09;SB=-300.26 GT:DP:GL:GQ 0/1:75:-163.35,-22.59,-104.35:99
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chr20 1133018 rs56746686 G A 579.10 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.72;MQ0=0;OQ=1279.39;QD=19.38;SB=-561.40 GT:DP:GL:GQ 0/1:63:-150.20,-18.98,-90.16:99
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chr20 1133294 rs56389713 C T 275.83 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=5.64;MQ=60.00;MQ0=0;OQ=1116.78;QD=14.69;SB=-583.61 GT:DP:GL:GQ 0/1:75:-137.56,-22.60,-137.77:99
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chr20 1133338 rs6131188 T C 663.82 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=746.69;QD=10.67;SB=-237.28 GT:DP:GL:GQ 0/1:66:-97.84,-19.89,-144.30:99
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chr20 1133894 rs6078137 C T 320.59 PASS AB=0.37;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.53;MQ0=0;OQ=1065.04;QD=21.74;SB=-402.41 GT:DP:GL:GQ 0/1:47:-123.95,-14.17,-53.00:99
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chr20 1134321 rs6040555 G A 754.42 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.59;MQ0=0;OQ=1816.57;QD=35.62;SB=-665.28 GT:DP:GL:GQ 1/1:48:-185.26,-14.47,-0.02:99
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chr20 1136161 . T G 0.18 FDRtranche2.00to10.00+ AB=0.64;AC=1;AF=0.50;AN=2;DP=55;Dels=0.00;HRun=1;HaplotypeScore=8.28;MQ=58.77;MQ0=0;OQ=105.73;QD=1.47;SB=107.31 GT:DP:GL:GQ 0/1:55:-30.42,-16.57,-164.29:99
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chr20 1136386 rs203556 C T 731.38 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.21;MQ0=0;OQ=2964.55;QD=38.50;SB=-1289.73 GT:DP:GL:GQ 1/1:75:-300.06,-22.59,-0.02:99
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chr20 1136933 rs203555 C T 555.30 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.36;MQ0=0;OQ=3834.07;QD=40.36;SB=-1906.73 GT:DP:GL:GQ 1/1:95:-382.41,-28.62,-0.03:99
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chr20 1139140 rs126622 T C 583.72 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=87;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.05;MQ0=0;OQ=1190.29;QD=13.53;SB=-590.96 GT:DP:GL:GQ 0/1:87:-148.52,-26.21,-183.34:99
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chr20 1140148 rs1885876 C T 673.58 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.38;MQ=59.37;MQ0=0;OQ=1102.95;QD=16.71;SB=-524.04 GT:DP:GL:GQ 0/1:59:-131.36,-17.78,-85.12:99
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chr20 1140706 . T C 309.52 PASS AB=0.38;AC=1;AF=0.50;AN=2;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1106.24;QD=18.44;SB=-419.32 GT:DP:GL:GQ 0/1:59:-131.68,-17.77,-92.95:99
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chr20 1140766 rs203551 T G 374.86 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=2;HaplotypeScore=2.00;MQ=59.60;MQ0=0;OQ=769.13;QD=13.49;SB=-398.14 GT:DP:GL:GQ 0/1:53:-96.17,-15.97,-85.76:99
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chr20 1142416 rs203550 C A 299.82 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=3;HaplotypeScore=0.87;MQ=58.55;MQ0=0;OQ=2877.88;QD=35.53;SB=-1368.13 GT:DP:GL:GQ 1/1:78:-291.39,-23.49,-0.02:99
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chr20 1142648 rs203549 A C 727.30 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=91.72;MQ0=0;OQ=2650.92;QD=34.88;SB=-1282.14 GT:DP:GL:GQ 1/1:75:-268.70,-22.59,-0.02:99
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chr20 1143014 rs203548 A G 674.58 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=58.61;MQ0=0;OQ=2867.55;QD=34.97;SB=-1048.44 GT:DP:GL:GQ 1/1:80:-290.36,-24.10,-0.02:99
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chr20 1143052 rs58974011 C T 676.12 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=59.42;MQ0=0;OQ=1066.98;QD=14.23;SB=-387.12 GT:DP:GL:GQ 0/1:75:-132.57,-22.59,-150.74:99
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chr20 1143245 rs203547 T A 524.82 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.97;MQ=59.19;MQ0=0;OQ=2769.85;QD=36.93;SB=-1254.46 GT:DP:GL:GQ 1/1:75:-283.06,-24.84,-2.49:99
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chr20 1143501 rs203546 G A 714.30 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.71;MQ0=0;OQ=2612.51;QD=40.19;SB=-1240.64 GT:DP:GL:GQ 1/1:64:-264.85,-19.27,-0.01:99
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chr20 1143532 rs12480258 G A 762.31 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.40;MQ0=0;OQ=1249.27;QD=17.85;SB=-595.14 GT:DP:GL:GQ 0/1:70:-149.29,-21.08,-119.59:99
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chr20 1143688 rs203545 G C 572.69 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=1.11;MQ=86.20;MQ0=0;OQ=3440.09;QD=39.54;SB=-1567.51 GT:DP:GL:GQ 1/1:85:-343.01,-25.64,-0.06:99
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chr20 1143784 rs203544 T C 447.76 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=1.13;MQ=76.44;MQ0=0;OQ=2215.75;QD=30.35;SB=-1021.74 GT:DP:GL:GQ 1/1:70:-225.23,-21.12,-0.07:99
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chr20 1143808 rs203543 C G 818.82 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.24;MQ0=0;OQ=2892.39;QD=39.09;SB=-1225.12 GT:DP:GL:GQ 1/1:73:-292.88,-22.03,-0.06:99
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chr20 1144899 rs203542 A G 697.43 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=40.10;MQ0=0;OQ=2378.34;QD=35.50;SB=-786.99 GT:DP:GL:GQ 1/1:66:-241.44,-19.88,-0.02:99
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chr20 1144943 rs203541 G C 174.85 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=3;HaplotypeScore=0.99;MQ=41.34;MQ0=0;OQ=886.92;QD=19.71;SB=-449.93 GT:DP:GL:GQ 0/1:44:-105.25,-13.27,-78.59:99
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chr20 1145487 rs203538 T C 575.14 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.63;MQ0=0;OQ=1665.94;QD=30.29;SB=-490.29 GT:DP:GL:GQ 1/1:51:-170.21,-15.37,-0.03:99
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chr20 1145590 . C T 280.47 PASS AB=0.48;AC=1;AF=0.50;AN=2;DP=62;Dels=0.00;HRun=1;HaplotypeScore=2.44;MQ=58.39;MQ0=0;OQ=1126.30;QD=16.81;SB=-423.44 GT:DP:GL:GQ 0/1:62:-134.60,-18.69,-94.04:99
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chr20 1146202 rs7271653 G A 367.07 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=34;Dels=0.00;HRun=1;HaplotypeScore=1.83;MQ=50.64;MQ0=2;OQ=340.40;QD=8.96;SB=-129.12 GT:DP:GL:GQ 0/1:34:-47.57,-10.24,-80.03:99
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chr20 1146599 rs203537 T C 614.48 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=52.35;MQ0=0;OQ=2773.25;QD=31.51;SB=-1357.56 GT:DP:GL:GQ 1/1:87:-280.99,-26.24,-0.08:99
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chr20 1146801 rs203536 G A 95.96 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=3.30;MQ=31.83;MQ0=14;OQ=2120.12;QD=28.27;SB=-586.35 GT:DP:GL:GQ 1/1:53:-215.61,-15.96,-0.01:99
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chr20 1147035 . C T 362.32 PASS AB=0.50;AC=1;AF=0.50;AN=2;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=52.08;MQ0=9;OQ=923.66;QD=12.48;SB=-326.84 GT:DP:GL:GQ 0/1:53:-111.61,-15.96,-98.81:99
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chr20 1147205 rs182193 A G 97.05 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=25.67;MQ0=7;OQ=2026.17;QD=27.02;SB=-580.40 GT:DP:GL:GQ 1/1:57:-206.22,-17.17,-0.01:99
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chr20 1147360 . C T 365.12 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=54;Dels=0.00;HRun=1;HaplotypeScore=1.73;MQ=45.37;MQ0=1;OQ=845.09;QD=14.57;SB=-337.88 GT:DP:GL:GQ 0/1:54:-104.06,-16.27,-96.66:99
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chr20 1147421 rs1090517 A T 486.28 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=1.98;MQ=40.29;MQ0=3;OQ=1923.59;QD=31.03;SB=-864.95 GT:DP:GL:GQ 1/1:52:-195.96,-15.66,-0.02:99
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chr20 1147487 rs1090516 A G 484.26 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=32.69;MQ0=9;OQ=1525.28;QD=22.43;SB=-611.07 GT:DP:GL:GQ 1/1:47:-156.14,-14.17,-0.03:99
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chr20 1147566 rs1090515 G A 427.89 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.21;MQ=37.09;MQ0=6;OQ=2010.22;QD=29.13;SB=-1027.38 GT:DP:GL:GQ 1/1:51:-204.62,-15.36,-0.01:99
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chr20 1148581 rs1090513 G T 2.13 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=7;HaplotypeScore=0.73;MQ=48.20;MQ0=0;OQ=2969.99;QD=35.78;SB=-1480.87 GT:DP:GL:GQ 1/1:83:-300.61,-25.00,-0.02:99
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chr20 1148909 rs1090512 A G 85.89 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=4.00;MQ=31.71;MQ0=2;OQ=2183.57;QD=29.51;SB=-898.56 GT:DP:GL:GQ 1/1:67:-221.99,-20.20,-0.05:99
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chr20 1149771 rs1090511 G A 507.09 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=37.41;MQ0=9;OQ=2744.92;QD=33.07;SB=-1145.06 GT:DP:GL:GQ 1/1:69:-278.09,-20.78,-0.02:99
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chr20 1150206 . C T 377.54 PASS AB=0.55;AC=1;AF=0.50;AN=2;DP=35;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=50.71;MQ0=0;OQ=495.40;QD=13.04;SB=-219.92 GT:DP:GL:GQ 0/1:35:-63.38,-10.55,-62.47:99
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chr20 1150366 rs1090510 T C 205.19 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=53.95;MQ0=0;OQ=2574.14;QD=30.64;SB=-1022.31 GT:DP:GL:GQ 1/1:78:-261.05,-23.52,-0.05:99
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chr20 1151869 . G A 0.19 FDRtranche2.00to10.00+ AB=0.38;AC=1;AF=0.50;AN=2;DP=31;Dels=0.00;HRun=0;HaplotypeScore=6.80;MQ=58.55;MQ0=1;OQ=693.78;QD=20.41;SB=-44.55 GT:DP:GL:GQ 0/1:31:-82.01,-9.35,-29.97:99
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chr20 1153093 rs430731 C T 499.59 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=1.09;MQ=58.96;MQ0=0;OQ=1778.97;QD=36.31;SB=-882.03 GT:DP:GL:GQ 1/1:46:-181.50,-13.86,-0.02:99
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chr20 1153886 rs397020 T C 118.28 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=2;HaplotypeScore=4.52;MQ=58.09;MQ0=0;OQ=2480.18;QD=34.93;SB=-986.73 GT:DP:GL:GQ 1/1:70:-251.63,-21.09,-0.03:99
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chr20 1154194 rs6040753 C T 138.72 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=23;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.05;MQ0=0;OQ=379.96;QD=15.83;SB=-10.00 GT:DP:GL:GQ 0/1:23:-48.21,-6.93,-39.96:99
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chr20 1154238 rs396004 G C 22.74 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=56.62;MQ0=0;OQ=698.03;QD=33.24;SB=-52.47 GT:DP:GL:GQ 1/1:19:-73.41,-5.74,-0.02:57.18
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chr20 1154272 rs446359 T G 41.10 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;HRun=1;HaplotypeScore=0.63;MQ=55.37;MQ0=0;OQ=386.40;QD=24.15;SB=-37.00 GT:DP:GL:GQ 1/1:12:-42.23,-3.62,-0.01:36.10
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chr20 1154860 . A G 170.17 PASS AB=0.25;AC=1;AF=0.50;AN=2;DP=7;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=89.83;QD=11.23;SB=-10.00 GT:DP:GL:GQ 0/1:7:-14.38,-2.12,-7.55:54.29
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chr20 1155138 rs442262 T G 409.34 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=23;Dels=0.00;HRun=1;HaplotypeScore=1.11;MQ=60.00;MQ0=0;OQ=239.22;QD=9.57;SB=-103.17 GT:DP:GL:GQ 0/1:23:-34.14,-6.93,-38.77:99
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chr20 1155422 rs6078233 C T 186.14 PASS AB=0.26;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=0;HaplotypeScore=2.77;MQ=57.26;MQ0=0;OQ=915.71;QD=24.10;SB=-480.02 GT:DP:GL:GQ 0/1:38:-106.32,-11.46,-32.04:99
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chr20 1156610 rs6078239 G A 520.59 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1766.11;QD=22.08;SB=-853.92 GT:DP:GL:GQ 0/1:78:-203.40,-23.50,-91.59:99
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chr20 1156846 rs6078240 C T 577.48 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1469.00;QD=21.60;SB=-608.10 GT:DP:GL:GQ 0/1:68:-170.67,-20.48,-91.98:99
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chr20 1158295 rs12480861 T A 355.09 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=2;HaplotypeScore=0.97;MQ=59.71;MQ0=0;OQ=1338.48;QD=16.94;SB=-613.04 GT:DP:GL:GQ 0/1:77:-160.32,-23.19,-137.55:99
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chr20 1158647 rs450739 T C 699.11 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=59.70;MQ0=0;OQ=2484.92;QD=31.86;SB=-1232.84 GT:DP:GL:GQ 1/1:77:-252.14,-23.22,-0.06:99
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chr20 1159017 rs6078248 T C 655.30 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=1.82;MQ=59.75;MQ0=0;OQ=1025.25;QD=13.85;SB=-459.21 GT:DP:GL:GQ 0/1:74:-128.10,-22.29,-154.72:99
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chr20 1160618 rs203535 G A 446.96 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=59.73;MQ0=0;OQ=3319.13;QD=39.51;SB=-1248.04 GT:DP:GL:GQ 1/1:84:-330.91,-25.30,-0.02:99
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chr20 1161841 rs6074324 G A 269.47 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=85;Dels=0.00;HRun=0;HaplotypeScore=3.45;MQ=59.74;MQ0=0;OQ=1641.19;QD=18.86;SB=-831.36 GT:DP:GL:GQ 0/1:85:-193.02,-25.61,-125.46:99
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chr20 1162814 rs203534 A C 611.11 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.06;MQ0=0;OQ=2079.80;QD=34.66;SB=-871.48 GT:DP:GL:GQ 1/1:60:-214.23,-20.24,-2.67:99
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chr20 1163382 . G A 263.12 PASS AB=0.44;AC=1;AF=0.50;AN=2;DP=68;Dels=0.00;HRun=1;HaplotypeScore=2.41;MQ=59.66;MQ0=0;OQ=1282.86;QD=18.87;SB=-600.62 GT:DP:GL:GQ 0/1:68:-152.06,-20.49,-100.12:99
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chr20 1163746 . T G 425.35 PASS AB=0.53;AC=1;AF=0.50;AN=2;DP=86;Dels=0.00;HRun=0;HaplotypeScore=1.99;MQ=59.73;MQ0=0;OQ=1130.96;QD=13.15;SB=-506.67 GT:DP:GL:GQ 0/1:86:-142.28,-25.90,-167.27:99
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chr20 1164558 rs6078274 T A 146.93 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=6.99;MQ=59.17;MQ0=0;OQ=690.86;QD=10.97;SB=-325.57 GT:DP:GL:GQ 0/1:62:-91.04,-18.67,-144.12:99
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chr20 1165544 rs17717060 A G 683.76 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=59.64;MQ0=0;OQ=1150.63;QD=17.98;SB=-488.11 GT:DP:GL:GQ 0/1:64:-137.62,-19.28,-106.03:99
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chr20 1165923 . C T 504.01 PASS AB=0.55;AC=1;AF=0.50;AN=2;DP=63;Dels=0.00;HRun=0;HaplotypeScore=1.05;MQ=60.00;MQ0=0;OQ=967.45;QD=15.12;SB=-448.92 GT:DP:GL:GQ 0/1:63:-119.00,-18.97,-126.60:99
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chr20 1169038 rs16992733 T C 560.17 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=1;HaplotypeScore=1.99;MQ=60.00;MQ0=0;OQ=655.74;QD=10.41;SB=-331.00 GT:DP:GL:GQ 0/1:63:-87.84,-18.99,-147.15:99
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chr20 1171495 rs17717217 G A 650.93 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=1398.87;QD=20.88;SB=-714.46 GT:DP:GL:GQ 0/1:66:-163.05,-19.88,-89.75:99
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chr20 1174018 rs17779487 A G 718.73 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1002.80;QD=12.08;SB=-422.90 GT:DP:GL:GQ 0/1:82:-128.26,-24.70,-190.04:99
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chr20 1174019 rs6074333 T C 624.14 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=84;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1460.57;QD=17.39;SB=-708.81 GT:DP:GL:GQ 0/1:84:-174.64,-25.30,-143.13:99
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chr20 1175041 rs6074338 G A 748.23 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1191.52;QD=15.28;SB=-560.01 GT:DP:GL:GQ 0/1:78:-145.93,-23.49,-148.97:99
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chr20 1175243 rs6078316 T C 462.52 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=1;HaplotypeScore=2.72;MQ=60.00;MQ0=0;OQ=887.87;QD=10.57;SB=-405.23 GT:DP:GL:GQ 0/1:82:-116.78,-24.71,-189.30:99
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chr20 1176093 rs1923876 G A 704.42 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1423.86;QD=17.80;SB=-678.35 GT:DP:GL:GQ 0/1:79:-169.47,-23.80,-130.69:99
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chr20 1176369 rs9653633 C T 658.33 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=86;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.23;MQ0=0;OQ=1552.89;QD=18.06;SB=-506.04 GT:DP:GL:GQ 0/1:86:-184.47,-25.90,-149.74:99
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chr20 1176713 . G A 0 FDRtranche2.00to10.00+ AB=0.77;AC=1;AF=0.50;AN=2;DP=81;Dels=0.00;HRun=20;HaplotypeScore=15.27;MQ=53.38;MQ0=1;OQ=295.01;QD=2.98;SB=155.47 GT:DP:GL:GQ 0/1:81:-57.19,-24.41,-227.54:99
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chr20 1178904 rs203528 C A 24.05 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=6.33;MQ=45.92;MQ0=0;OQ=1927.96;QD=30.60;SB=-741.60 GT:DP:GL:GQ 1/1:56:-199.74,-20.04,-3.36:99
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chr20 1179418 rs16992790 A G 352.43 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=100;Dels=0.00;HRun=0;HaplotypeScore=3.80;MQ=58.71;MQ0=0;OQ=1510.19;QD=14.81;SB=-724.58 GT:DP:GL:GQ 0/1:100:-184.42,-30.12,-200.52:99
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chr20 1179683 rs203529 T C 605.96 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;HRun=1;HaplotypeScore=0.89;MQ=59.10;MQ0=0;OQ=2909.32;QD=35.05;SB=-1367.50 GT:DP:GL:GQ 1/1:81:-294.54,-24.40,-0.02:99
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chr20 1180032 rs6040904 T C 762.17 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=1.79;MQ=121.69;MQ0=0;OQ=1271.18;QD=15.50;SB=-445.62 GT:DP:GL:GQ 0/1:80:-154.50,-24.10,-149.87:99
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chr20 1180727 . A G 126.79 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=44;Dels=0.00;HRun=0;HaplotypeScore=3.85;MQ=58.63;MQ0=0;OQ=580.95;QD=11.39;SB=-176.62 GT:DP:GL:GQ 0/1:44:-74.64,-13.26,-89.45:99
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chr20 1187320 rs62187487 C T 1.62 PASS AB=0.72;AC=1;AF=0.50;AN=2;DB;DP=87;Dels=0.00;HRun=0;HaplotypeScore=6.96;MQ=27.00;MQ0=26;OQ=307.79;QD=2.02;SB=-135.55 GT:DP:GL:GQ 0/1:87:-60.27,-26.20,-264.18:99
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chr20 1187361 . G A 42.85 ABFilter;DPFilter;HARD_TO_VALIDATE;LowQual AB=0.88;AC=1;AF=0.50;AN=2;DP=84;Dels=0.00;HRun=0;HaplotypeScore=3.00;MQ=22.83;MQ0=49;QD=0.24;SB=29.12 GT:DP:GL:GQ 0/1:84:-32.87,-25.30,-271.36:75.68
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chr20 1187419 . G A 0.19 FDRtranche2.00to10.00+ AB=0.76;AC=1;AF=0.50;AN=2;DP=49;Dels=0.00;HRun=0;HaplotypeScore=17.91;MQ=16.71;MQ0=65;OQ=304.39;QD=2.16;SB=-10.00 GT:DP:GL:GQ 0/1:49:-48.48,-14.76,-125.13:99
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chr20 1187615 rs6134384 A T 1.63 PASS AB=0.73;AC=1;AF=0.50;AN=2;DB;DP=33;Dels=0.00;HRun=1;HaplotypeScore=10.10;MQ=22.15;MQ0=21;OQ=55.80;QD=0.89;SB=-10.00 GT:DP:GL:GQ 0/1:33:-18.80,-9.94,-109.86:88.63
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chr20 1187677 . C G 22.33 PASS AB=0.86;AC=1;AF=0.50;AN=2;DP=60;Dels=0.00;HRun=0;HaplotypeScore=2.16;MQ=21.93;MQ0=37;OQ=372.53;QD=3.42;SB=-10.00 GT:DP:GL:GQ 0/1:60:-58.62,-18.08,-196.71:99
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chr20 1187758 . T C 0.11 FDRtranche2.00to10.00+ AB=0.87;AC=1;AF=0.50;AN=2;DP=94;Dels=0.00;HRun=0;HaplotypeScore=27.67;MQ=18.52;MQ0=53;OQ=309.71;QD=1.69;SB=105.67 GT:DP:GL:GQ 0/1:94:-62.57,-28.31,-310.97:99
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chr20 1187761 rs6078369 A T 1.28 PASS AB=0.80;AC=1;AF=0.50;AN=2;DB;DP=94;Dels=0.00;HRun=0;HaplotypeScore=28.46;MQ=18.41;MQ0=53;OQ=919.72;QD=5.03;SB=15.21 GT:DP:GL:GQ 0/1:94:-123.56,-28.31,-237.87:99
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chr20 1187857 rs1294739 G A 1.47 PASS AB=0.69;AC=1;AF=0.50;AN=2;DB;DP=9;Dels=0.00;HRun=0;HaplotypeScore=12.99;MQ=9.41;MQ0=58;OQ=101.30;QD=1.30;SB=-3.98 GT:DP:GL:GQ 0/1:9:-16.12,-2.71,-17.40:99
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chr20 1188048 . G T 0.14 FDRtranche2.00to10.00+ AB=0.73;AC=1;AF=0.50;AN=2;DP=38;Dels=0.00;HRun=0;HaplotypeScore=8.99;MQ=17.54;MQ0=47;OQ=52.68;QD=0.50;SB=-25.88 GT:DP:GL:GQ 0/1:38:-20.00,-11.45,-118.09:85.52
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chr20 1188052 . A T 0.21 FDRtranche2.00to10.00+ AB=0.63;AC=1;AF=0.50;AN=2;DP=37;Dels=0.00;HRun=1;HaplotypeScore=9.15;MQ=15.39;MQ0=49;OQ=172.10;QD=1.56;SB=-30.34 GT:DP:GL:GQ 0/1:37:-31.64,-11.14,-105.93:99
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chr20 1188168 . A G 20.53 ABFilter;HARD_TO_VALIDATE;LowQual AB=0.93;AC=1;AF=0.50;AN=2;DP=4;Dels=0.00;HRun=1;HaplotypeScore=6.99;MQ=5.97;MQ0=80;QD=0.20;SB=-10.00 GT:DP:GL:GQ 0/1:4:-6.54,-1.20,-8.11:53.32
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chr20 1188222 . A T 16.14 ABFilter;DPFilter;HARD_TO_VALIDATE;LowQual AB=0.98;AC=1;AF=0.50;AN=2;DP=10;Dels=0.00;HRun=1;HaplotypeScore=12.98;MQ=8.08;MQ0=102;QD=0.11;SB=5.05 GT:DP:GL:GQ 0/1:10:-7.90,-3.01,-31.21:48.87
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chr20 1188299 . A G 37.67 ABFilter;DPFilter;HARD_TO_VALIDATE;LowQual AB=0.89;AC=1;AF=0.50;AN=2;DP=23;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=12.96;MQ0=76;QD=0.30;SB=17.09 GT:DP:GL:GQ 0/1:23:-13.98,-6.93,-77.86:70.50
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chr20 1188420 . G A 70.99 PASS AB=0.85;AC=1;AF=0.50;AN=2;DP=20;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=12.65;MQ0=42;OQ=363.31;QD=4.43;SB=-10.00 GT:DP:GL:GQ 0/1:20:-45.64,-6.02,-34.87:99
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chr20 1188483 . G A 2.98 PASS AB=0.88;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.87;MQ=16.71;MQ0=35;OQ=134.03;QD=1.08;SB=-4.00 GT:DP:GL:GQ 0/1:56:-33.56,-16.88,-173.76:99
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chr20 1188914 rs1853403 C T 487.18 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=23.44;MQ0=5;OQ=2224.17;QD=26.48;SB=-924.71 GT:DP:GL:GQ 1/1:57:-226.02,-17.17,-0.02:99
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chr20 1188927 . A G 16.18 PASS AB=0.63;AC=1;AF=0.50;AN=2;DP=57;Dels=0.00;HRun=1;HaplotypeScore=0.92;MQ=23.66;MQ0=3;OQ=324.03;QD=3.90;SB=-170.53 GT:DP:GL:GQ 0/1:57:-52.86,-17.17,-171.02:99
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chr20 1188995 rs4084794 T C 59.04 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=24.03;MQ0=2;OQ=1937.91;QD=25.50;SB=-784.00 GT:DP:GL:GQ 1/1:53:-197.39,-15.96,-0.01:99
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chr20 1189287 rs6074364 T G 473.62 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=2;HaplotypeScore=2.50;MQ=50.15;MQ0=0;OQ=977.52;QD=14.59;SB=-387.62 GT:DP:GL:GQ 0/1:62:-119.71,-18.67,-106.14:99
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chr20 1191052 rs6040983 C A 730.67 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.91;MQ0=0;OQ=2497.62;QD=36.73;SB=-1032.62 GT:DP:GL:GQ 1/1:67:-253.36,-20.17,-0.01:99
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chr20 1191462 rs6040984 C T 634.84 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=1.81;MQ=59.70;MQ0=0;OQ=1278.37;QD=16.39;SB=-607.64 GT:DP:GL:GQ 0/1:76:-154.02,-22.90,-133.23:99
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chr20 1193158 rs6078395 C T 580.88 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=1.45;MQ=60.00;MQ0=0;OQ=866.10;QD=12.93;SB=-415.88 GT:DP:GL:GQ 0/1:65:-109.47,-19.58,-138.18:99
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chr20 1194383 rs912110 T C 748.68 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2321.95;QD=36.28;SB=-1102.12 GT:DP:GL:GQ 1/1:64:-235.80,-19.27,-0.02:99
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chr20 1195246 rs6078405 T C 5.48 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=7;Dels=0.00;HRun=4;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=51.70;QD=5.17;SB=-39.67 GT:DP:GL:GQ 0/1:7:-10.57,-2.11,-13.26:84.54
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chr20 1196286 rs1407766 A G 840.02 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.44;MQ0=0;OQ=2546.55;QD=34.41;SB=-1061.07 GT:DP:GL:GQ 1/1:72:-258.27,-21.69,-0.03:99
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chr20 1197345 rs6078413 G C 525.35 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=1.64;MQ=59.33;MQ0=0;OQ=1368.64;QD=19.84;SB=-482.79 GT:DP:GL:GQ 0/1:68:-160.64,-20.49,-130.86:99
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chr20 1200595 rs17717557 G A 688.89 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.65;MQ0=0;OQ=832.58;QD=15.71;SB=-301.82 GT:DP:GL:GQ 0/1:52:-102.21,-15.67,-89.67:99
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chr20 1201400 rs912109 T A 522.61 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=58.74;MQ0=0;OQ=2332.50;QD=37.02;SB=-1158.52 GT:DP:GL:GQ 1/1:62:-236.85,-18.67,-0.02:99
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chr20 1201714 rs753949 G T 604.46 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=2.89;MQ=59.60;MQ0=0;OQ=686.12;QD=11.83;SB=-313.99 GT:DP:GL:GQ 0/1:56:-88.77,-16.87,-111.49:99
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chr20 1203478 rs6074376 C T 733.20 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=724.93;QD=13.68;SB=-329.32 GT:DP:GL:GQ 0/1:47:-89.95,-14.17,-78.02:99
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chr20 1206197 . A C 79.21 ABFilter;DPFilter;Indel AB=0.83;AC=1;AF=0.50;AN=2;DP=65;Dels=0.00;HRun=0;HaplotypeScore=34.34;MQ=72.86;MQ0=1;QD=1.09;SB=29.58 GT:DP:GL:GQ 0/1:65:-30.79,-19.58,-202.88:99
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chr20 1206199 . C G 245.97 ABFilter;Indel AB=0.81;AC=1;AF=0.50;AN=2;DP=67;Dels=0.00;HRun=0;HaplotypeScore=3.10;MQ=72.73;MQ0=1;QD=3.42;SB=-24.61 GT:DP:GL:GQ 0/1:67:-48.07,-20.19,-242.83:99
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chr20 1206306 rs6078444 G A 768.95 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=1.45;MQ=126.36;MQ0=0;OQ=1018.43;QD=13.76;SB=-497.72 GT:DP:GL:GQ 0/1:69:-125.92,-20.79,-125.89:99
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chr20 1206457 . G A 0.06 FDRtranche2.00to10.00+ AB=0.87;AC=1;AF=0.50;AN=2;DP=58;Dels=0.00;HRun=0;HaplotypeScore=36.29;MQ=51.24;MQ0=1;OQ=56.97;QD=0.92;SB=-32.39 GT:DP:GL:GQ 0/1:58:-26.45,-17.47,-180.58:89.81
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chr20 1206458 . C T 44.38 ABFilter;LowQual AB=0.84;AC=1;AF=0.50;AN=2;DP=54;Dels=0.02;HRun=0;HaplotypeScore=28.97;MQ=51.67;MQ0=1;QD=0.72;SB=-48.47 GT:DP:GL:GQ 0/1:54:-23.69,-15.97,-168.04:77.21
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chr20 1207367 rs6078448 A G 682.72 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=1.39;MQ=58.79;MQ0=0;OQ=1012.04;QD=14.46;SB=-423.86 GT:DP:GL:GQ 0/1:68:-124.98,-20.50,-119.11:99
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chr20 1211590 . C T 409.47 PASS AB=0.57;AC=1;AF=0.50;AN=2;DP=69;Dels=0.00;HRun=1;HaplotypeScore=0.79;MQ=59.34;MQ0=0;OQ=916.60;QD=12.73;SB=-388.37 GT:DP:GL:GQ 0/1:69:-115.75,-20.81,-126.86:99
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chr20 1211701 rs56982547 A G 417.70 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=1;HaplotypeScore=3.09;MQ=58.94;MQ0=0;OQ=1139.11;QD=14.42;SB=-512.71 GT:DP:GL:GQ 0/1:76:-140.10,-22.91,-135.01:99
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chr20 1212026 rs6041107 C G 423.01 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=1.55;MQ=59.39;MQ0=0;OQ=2762.72;QD=40.63;SB=-1232.88 GT:DP:GL:GQ 1/1:65:-279.88,-19.59,-0.02:99
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chr20 1212662 rs6033309 G A 722.49 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2593.78;QD=39.30;SB=-1323.28 GT:DP:GL:GQ 1/1:65:-262.98,-19.58,-0.02:99
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chr20 1212725 rs6033310 G A 698.13 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2718.46;QD=39.40;SB=-1049.92 GT:DP:GL:GQ 1/1:68:-275.45,-20.48,-0.02:99
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chr20 1213018 rs6033312 T C 185.14 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1765.64;QD=29.93;SB=-903.05 GT:DP:GL:GQ 1/1:55:-180.20,-16.59,-0.05:99
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chr20 1213077 rs6041121 C T 799.10 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3397.62;QD=40.94;SB=-1436.40 GT:DP:GL:GQ 1/1:83:-338.76,-25.00,-0.02:99
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chr20 1213152 rs11697413 G A 268.67 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=2;HaplotypeScore=2.03;MQ=60.00;MQ0=0;OQ=1784.77;QD=19.83;SB=-883.60 GT:DP:GL:GQ 0/1:88:-208.26,-26.50,-139.92:99
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chr20 1213683 rs1555562 A T 726.67 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=1997.16;QD=36.98;SB=-955.44 GT:DP:GL:GQ 1/1:54:-203.32,-16.27,-0.02:99
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chr20 1214403 rs966846 G A 603.66 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=2.05;MQ=57.80;MQ0=0;OQ=1546.52;QD=20.08;SB=-760.31 GT:DP:GL:GQ 0/1:74:-180.24,-22.30,-97.88:99
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chr20 1215130 rs6078462 T C 742.68 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=1.98;MQ=58.10;MQ0=0;OQ=930.06;QD=13.48;SB=-442.95 GT:DP:GL:GQ 0/1:68:-116.78,-20.49,-141.55:99
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chr20 1216250 rs1040974 C T 832.86 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.65;MQ0=0;OQ=2773.09;QD=39.06;SB=-1343.99 GT:DP:GL:GQ 1/1:69:-280.91,-20.79,-0.02:99
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chr20 1217120 rs1555563 G A 671.16 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.46;MQ0=0;OQ=1543.33;QD=35.89;SB=-720.00 GT:DP:GL:GQ 1/1:40:-157.93,-12.05,-0.01:99
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chr20 1217263 . C T 0.03 FDRtranche2.00to10.00+ AB=0.75;AC=1;AF=0.50;AN=2;DP=65;Dels=0.03;HRun=7;HaplotypeScore=11.00;MQ=51.60;MQ0=0;OQ=115.25;QD=1.25;SB=95.25 GT:DP:GL:GQ 0/1:65:-33.50,-18.70,-174.65:99
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chr20 1217588 rs6033330 C T 708.33 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=57.82;MQ0=0;OQ=3606.59;QD=38.78;SB=-1472.99 GT:DP:GL:GQ 1/1:89:-359.66,-26.81,-0.02:99
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chr20 1218094 rs6041150 A G 435.81 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=2;HaplotypeScore=2.01;MQ=58.76;MQ0=0;OQ=2376.73;QD=34.95;SB=-941.96 GT:DP:GL:GQ 1/1:67:-241.28,-20.18,-0.02:99
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chr20 1219273 rs1323132 A C 591.58 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.99;MQ0=0;OQ=2828.29;QD=30.74;SB=-1331.70 GT:DP:GL:GQ 1/1:91:-286.49,-27.43,-0.08:99
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chr20 1219374 rs1323133 T A 747.84 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.19;MQ0=0;OQ=2569.42;QD=37.24;SB=-1236.51 GT:DP:GL:GQ 1/1:69:-260.54,-20.78,-0.02:99
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chr20 1219545 rs1323134 A G 613.38 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;HRun=0;HaplotypeScore=1.31;MQ=59.40;MQ0=0;OQ=3217.50;QD=34.60;SB=-1291.61 GT:DP:GL:GQ 1/1:91:-328.10,-29.99,-2.77:99
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chr20 1219830 rs6134473 T A 636.61 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=2.35;MQ=59.66;MQ0=0;OQ=1310.18;QD=19.27;SB=-604.39 GT:DP:GL:GQ 0/1:67:-154.48,-20.18,-99.54:99
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chr20 1220219 rs1407767 A G 745.13 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=65.44;MQ0=0;OQ=1683.02;QD=30.05;SB=-843.33 GT:DP:GL:GQ 1/1:53:-171.93,-15.98,-0.05:99
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chr20 1220405 rs912108 G A 365.50 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=105;Dels=0.00;HRun=0;HaplotypeScore=3.57;MQ=58.56;MQ0=0;OQ=1594.63;QD=14.90;SB=-743.22 GT:DP:GL:GQ 0/1:105:-194.38,-31.63,-201.95:99
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chr20 1220686 rs912107 T C 631.08 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=1.95;MQ=59.06;MQ0=0;OQ=924.47;QD=12.49;SB=-353.57 GT:DP:GL:GQ 0/1:72:-117.42,-21.69,-160.96:99
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chr20 1222231 rs12625859 C T 171.60 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=4;HaplotypeScore=3.02;MQ=59.30;MQ0=0;OQ=1009.77;QD=16.83;SB=-442.97 GT:DP:GL:GQ 0/1:59:-122.04,-17.78,-102.77:99
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chr20 1222499 . A G 15.72 DPFilter;LowQual AB=0.68;AC=1;AF=0.50;AN=2;DP=33;Dels=0.00;HRun=3;HaplotypeScore=4.92;MQ=57.87;MQ0=0;QD=0.36;SB=71.25 GT:DP:GL:GQ 0/1:33:-14.79,-9.95,-109.78:48.43
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chr20 1224205 rs6074395 A G 483 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=3.07;MQ=59.60;MQ0=0;OQ=2023.21;QD=35.49;SB=-681.57 GT:DP:GL:GQ 1/1:57:-205.93,-17.17,-0.02:99
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chr20 1225099 rs6078493 G A 767.64 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.45;MQ=60.00;MQ0=0;OQ=720.81;QD=13.86;SB=-353.86 GT:DP:GL:GQ 0/1:51:-90.74,-15.38,-89.73:99
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chr20 1225157 rs6109320 G C 542.16 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=1.79;MQ=58.98;MQ0=0;OQ=1347.17;QD=22.08;SB=-620.60 GT:DP:GL:GQ 0/1:61:-156.38,-18.38,-108.90:99
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chr20 1227336 rs2317645 G C 618.63 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=36;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=517.44;QD=14.37;SB=-249.09 GT:DP:GL:GQ 0/1:36:-65.88,-10.85,-89.84:99
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chr20 1228344 rs912104 G T 513.81 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=2.14;MQ=59.45;MQ0=0;OQ=1151.05;QD=16.93;SB=-455.03 GT:DP:GL:GQ 0/1:67:-138.57,-20.18,-101.76:99
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chr20 1228995 rs3795142 T A 389.94 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=42;Dels=0.00;HRun=0;HaplotypeScore=3.68;MQ=58.58;MQ0=0;OQ=405.17;QD=9.42;SB=-185.72 GT:DP:GL:GQ 0/1:42:-56.45,-12.65,-102.73:99
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chr20 1229004 rs3795141 T C 84.69 PASS AB=0.66;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=5.33;MQ=58.71;MQ0=0;OQ=249.77;QD=5.31;SB=-110.18 GT:DP:GL:GQ 0/1:43:-41.22,-12.96,-121.01:99
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chr20 1229685 rs3818331 A G 565.29 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.87;MQ=59.59;MQ0=0;OQ=456.09;QD=8.14;SB=-182.40 GT:DP:GL:GQ 0/1:50:-63.98,-15.08,-110.75:99
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chr20 1230285 rs6078509 A C 577.67 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=47.98;MQ0=0;OQ=747.38;QD=13.59;SB=-243.83 GT:DP:GL:GQ 0/1:55:-94.59,-16.57,-105.82:99
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chr20 1231368 . C T 383.08 PASS AB=0.55;AC=1;AF=0.50;AN=2;DP=68;Dels=0.00;HRun=0;HaplotypeScore=2.57;MQ=52.02;MQ0=0;OQ=1059.66;QD=14.52;SB=-536.03 GT:DP:GL:GQ 0/1:68:-129.75,-20.50,-112.88:99
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chr20 1231682 rs12624336 T C 416.49 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=2.97;MQ=59.43;MQ0=0;OQ=928.58;QD=12.72;SB=-394.62 GT:DP:GL:GQ 0/1:72:-117.83,-21.69,-158.93:99
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chr20 1233154 rs3795140 G C 338.15 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=86;Dels=0.00;HRun=1;HaplotypeScore=3.45;MQ=60.00;MQ0=0;OQ=1243.49;QD=14.29;SB=-608.93 GT:DP:GL:GQ 0/1:86:-156.17,-28.53,-225.20:99
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chr20 1233933 rs3795139 G A 694.64 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=28;Dels=0.00;HRun=0;HaplotypeScore=1.37;MQ=57.25;MQ0=0;OQ=435.49;QD=14.05;SB=-236.79 GT:DP:GL:GQ 0/1:28:-55.27,-8.44,-44.86:99
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chr20 1234711 rs4813082 T C 82.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;HRun=1;HaplotypeScore=1.72;MQ=58.50;MQ0=0;OQ=853.19;QD=27.52;SB=-310.47 GT:DP:GL:GQ 1/1:27:-88.93,-8.14,-0.02:81.20
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chr20 1235051 rs3764715 G A 727.73 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=1.32;MQ=59.13;MQ0=0;OQ=781.33;QD=14.74;SB=-293.78 GT:DP:GL:GQ 0/1:52:-97.10,-15.68,-87.31:99
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chr20 1235105 rs3764714 G A 470.62 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=3.68;MQ=59.56;MQ0=0;OQ=749.70;QD=14.42;SB=-289.78 GT:DP:GL:GQ 0/1:50:-93.32,-15.07,-85.22:99
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chr20 1235251 rs3764713 C T 284.16 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=3.92;MQ=59.48;MQ0=0;OQ=807.14;QD=18.34;SB=-319.87 GT:DP:GL:GQ 0/1:40:-96.06,-12.06,-49.38:99
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chr20 1236223 rs6134520 T C 495.66 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=37;Dels=0.00;HRun=1;HaplotypeScore=1.78;MQ=59.51;MQ0=0;OQ=344.36;QD=9.06;SB=-164.94 GT:DP:GL:GQ 0/1:37:-48.88,-11.16,-83.23:99
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chr20 1236966 rs3803947 G A 717.86 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.49;MQ0=0;OQ=652.37;QD=14.50;SB=-314.81 GT:DP:GL:GQ 0/1:45:-82.08,-13.56,-84.59:99
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chr20 1237787 rs4814096 G A 628.35 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=1915.90;QD=39.10;SB=-783.68 GT:DP:GL:GQ 1/1:48:-195.19,-14.46,-0.01:99
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chr20 1238016 rs3752306 G A 495.07 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=1;HaplotypeScore=1.15;MQ=59.54;MQ0=0;OQ=955.62;QD=15.93;SB=-262.12 GT:DP:GL:GQ 0/1:54:-115.11,-16.27,-91.26:99
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chr20 1238699 rs7466 G C 590.45 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=1;HaplotypeScore=0.92;MQ=59.08;MQ0=0;OQ=2668.05;QD=40.42;SB=-1204.50 GT:DP:GL:GQ 1/1:62:-270.41,-18.68,-0.02:99
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chr20 1239018 rs11449 G A 551.06 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=39;Dels=0.00;HRun=1;HaplotypeScore=1.61;MQ=60.00;MQ0=0;OQ=406.29;QD=9.91;SB=-192.89 GT:DP:GL:GQ 0/1:39:-55.67,-11.76,-81.59:99
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chr20 1239076 rs1048628 G C 507.66 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=1.91;MQ=68.29;MQ0=0;OQ=678.44;QD=13.57;SB=-273.52 GT:DP:GL:GQ 0/1:50:-86.20,-15.07,-127.21:99
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chr20 1239393 rs2273956 A G 75.44 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;HRun=4;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1402.38;QD=33.39;SB=-449.51 GT:DP:GL:GQ 1/1:41:-143.84,-12.35,-0.02:99
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chr20 1239739 rs6134536 T C 342.87 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=4.11;MQ=57.15;MQ0=0;OQ=1401.55;QD=29.20;SB=-551.06 GT:DP:GL:GQ 1/1:45:-143.78,-13.57,-0.04:99
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chr20 1239778 rs2273957 T A 603.77 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=1.89;MQ=57.79;MQ0=0;OQ=611.95;QD=11.55;SB=-285.31 GT:DP:GL:GQ 0/1:53:-80.44,-15.97,-118.97:99
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chr20 1239928 rs4814102 G A 555.20 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.43;MQ=58.88;MQ0=0;OQ=2088.07;QD=33.68;SB=-446.54 GT:DP:GL:GQ 1/1:55:-212.43,-16.58,-0.03:99
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chr20 1239987 rs4814103 T G 492.19 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=53.77;MQ0=0;OQ=1260.57;QD=26.82;SB=-591.59 GT:DP:GL:GQ 1/1:43:-129.69,-12.97,-0.05:99
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chr20 1239993 rs4814104 G A 647.86 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=81.02;MQ0=0;OQ=1866.97;QD=37.34;SB=-722.48 GT:DP:GL:GQ 1/1:48:-190.30,-14.46,-0.02:99
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chr20 1240002 rs4814105 A G 309.08 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=2;HaplotypeScore=0.58;MQ=91.93;MQ0=0;OQ=1858.14;QD=32.60;SB=-792.27 GT:DP:GL:GQ 1/1:54:-189.43,-16.27,-0.03:99
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chr20 1240108 rs4814106 G A 462.55 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=3.97;MQ=86.37;MQ0=0;OQ=1133.83;QD=14.92;SB=-578.02 GT:DP:GL:GQ 0/1:73:-138.67,-22.00,-125.28:99
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chr20 1240126 rs4814107 T C 372.57 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=2;HaplotypeScore=2.32;MQ=81.73;MQ0=0;OQ=1054.45;QD=13.52;SB=-448.54 GT:DP:GL:GQ 0/1:74:-131.03,-22.30,-145.84:99
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chr20 1240180 . A T 150.38 PASS AB=0.54;AC=1;AF=0.50;AN=2;DP=66;Dels=0.00;HRun=2;HaplotypeScore=0.97;MQ=58.72;MQ0=0;OQ=952.12;QD=13.80;SB=-291.63 GT:DP:GL:GQ 0/1:66:-118.38,-19.88,-132.79:99
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chr20 1240211 rs6104888 T C 429.11 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=56.73;MQ0=0;OQ=526.90;QD=9.24;SB=-278.12 GT:DP:GL:GQ 0/1:53:-71.95,-15.97,-126.78:99
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chr20 1240216 rs6104889 A C 581.24 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=56.67;MQ0=0;OQ=605.37;QD=10.81;SB=-300.48 GT:DP:GL:GQ 0/1:54:-80.09,-16.27,-117.09:99
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chr20 1240369 rs6104890 C T 733.31 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=55.83;MQ0=0;OQ=1394.70;QD=17.43;SB=-491.98 GT:DP:GL:GQ 0/1:79:-166.55,-23.80,-134.15:99
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chr20 1240449 rs6078557 A G 556.52 PASS AB=0.44;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=2.65;MQ=54.45;MQ0=0;OQ=998.81;QD=13.68;SB=-501.68 GT:DP:GL:GQ 0/1:68:-123.66,-20.50,-122.20:99
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chr20 1240606 rs3795138 T C 421.05 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=40;Dels=0.00;HRun=0;HaplotypeScore=3.32;MQ=62.42;MQ0=0;OQ=597.93;QD=14.24;SB=-284.66 GT:DP:GL:GQ 0/1:40:-75.13,-12.06,-64.64:99
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chr20 1240845 rs3795137 C T 663.60 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=44;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=105.56;MQ0=0;OQ=511.46;QD=11.12;SB=-199.19 GT:DP:GL:GQ 0/1:44:-67.70,-13.27,-84.93:99
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chr20 1240964 rs4814110 T C 643.99 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.30;MQ0=0;OQ=1053.25;QD=29.26;SB=-453.19 GT:DP:GL:GQ 1/1:34:-108.94,-10.26,-0.03:99
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chr20 1241008 rs2273958 C T 724.46 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=1.23;MQ=56.23;MQ0=0;OQ=569.52;QD=11.86;SB=-251.25 GT:DP:GL:GQ 0/1:47:-74.40,-14.16,-96.01:99
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chr20 1241107 rs55655566 G A 654.20 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=1.13;MQ=57.84;MQ0=0;OQ=755.46;QD=11.99;SB=-388.90 GT:DP:GL:GQ 0/1:60:-96.92,-18.09,-112.96:99
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chr20 1241247 rs2273959 C T 526.73 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=35;Dels=0.00;HRun=0;HaplotypeScore=1.45;MQ=58.87;MQ0=0;OQ=714.87;QD=19.32;SB=-330.86 GT:DP:GL:GQ 0/1:35:-85.32,-10.55,-43.71:99
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chr20 1241536 rs2281711 A G 149.53 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.57;MQ0=0;OQ=470.03;QD=7.23;SB=-232.86 GT:DP:GL:GQ 0/1:62:-68.98,-18.69,-160.98:99
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chr20 1242431 rs6514277 C A 725.45 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=737.57;QD=10.85;SB=-339.06 GT:DP:GL:GQ 0/1:65:-99.09,-22.05,-133.25:99
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chr20 1243315 rs6041342 C T 741.91 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=2329.10;QD=38.18;SB=-1175.58 GT:DP:GL:GQ 1/1:59:-236.51,-17.77,-0.02:99
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chr20 1243538 rs6074424 C G 606.37 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=58.68;MQ0=0;OQ=3694.88;QD=43.47;SB=-1555.23 GT:DP:GL:GQ 1/1:83:-368.49,-25.01,-0.02:99
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chr20 1243722 rs6078575 A G 429.13 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=58.77;MQ0=0;OQ=2000.62;QD=34.49;SB=-905.01 GT:DP:GL:GQ 1/1:57:-203.67,-17.17,-0.02:99
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chr20 1243889 rs6074425 G A 669.46 PASS AB=0.41;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=59.63;MQ0=0;OQ=1272.45;QD=20.20;SB=-554.59 GT:DP:GL:GQ 0/1:62:-149.20,-18.68,-89.65:99
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chr20 1244044 rs6041352 G A 813.29 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.24;MQ0=0;OQ=2132.72;QD=38.78;SB=-1015.86 GT:DP:GL:GQ 1/1:53:-216.87,-15.96,-0.01:99
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chr20 1244063 rs6041353 C T 720.72 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.29;MQ0=0;OQ=2318.36;QD=39.29;SB=-1124.04 GT:DP:GL:GQ 1/1:58:-235.43,-17.47,-0.01:99
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chr20 1244811 rs6033417 C T 772.56 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.08;MQ0=0;OQ=2451.67;QD=40.19;SB=-994.03 GT:DP:GL:GQ 1/1:61:-248.77,-18.37,-0.01:99
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chr20 1244833 rs7354747 A G 635.55 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.65;MQ0=0;OQ=1002.12;QD=16.99;SB=-313.30 GT:DP:GL:GQ 0/1:59:-121.27,-17.77,-102.69:99
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chr20 1245516 rs2146662 G A 761.15 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1152.12;QD=15.57;SB=-511.00 GT:DP:GL:GQ 0/1:73:-140.49,-21.99,-137.67:99
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chr20 1246257 rs1018576 C G 783.60 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.39;MQ0=0;OQ=2505.01;QD=41.07;SB=-1157.05 GT:DP:GL:GQ 1/1:59:-254.11,-17.78,-0.02:99
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chr20 1246397 rs1018575 T C 620.08 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=1;HaplotypeScore=2.30;MQ=59.71;MQ0=0;OQ=1189.38;QD=14.87;SB=-503.55 GT:DP:GL:GQ 0/1:77:-145.42,-23.20,-141.34:99
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chr20 1246794 rs6078610 G A 761.27 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=59.11;MQ0=0;OQ=2670.12;QD=39.27;SB=-1301.25 GT:DP:GL:GQ 1/1:67:-270.61,-20.18,-0.02:99
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chr20 1247485 rs62187512 A G 567.81 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=2.56;MQ=59.32;MQ0=0;OQ=724.41;QD=13.17;SB=-344.31 GT:DP:GL:GQ 0/1:55:-92.29,-16.57,-115.29:99
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chr20 1248433 rs11087032 C T 637.03 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=1.81;MQ=59.62;MQ0=0;OQ=789.72;QD=16.12;SB=-273.73 GT:DP:GL:GQ 0/1:48:-96.72,-14.46,-81.89:99
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chr20 1248456 rs6041386 C T 685.04 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=59.67;MQ0=0;OQ=773.82;QD=13.82;SB=-240.19 GT:DP:GL:GQ 0/1:55:-97.24,-16.57,-101.35:99
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chr20 1249787 rs56246307 G A 337.79 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=4.66;MQ=59.22;MQ0=0;OQ=805.06;QD=13.65;SB=-378.39 GT:DP:GL:GQ 0/1:57:-100.97,-17.18,-102.69:99
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chr20 1250727 rs4319993 A G 13.90 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=11.12;MQ=59.70;MQ0=0;OQ=661.34;QD=10.67;SB=-128.27 GT:DP:GL:GQ 0/1:52:-85.08,-15.66,-116.75:99
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chr20 1253272 rs754363 C A 727.52 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2434.21;QD=36.88;SB=-1011.61 GT:DP:GL:GQ 1/1:66:-247.02,-19.87,-0.01:99
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chr20 1253773 rs6041440 G A 636.14 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.42;MQ=58.86;MQ0=0;OQ=2126.99;QD=34.87;SB=-1057.32 GT:DP:GL:GQ 1/1:56:-216.31,-16.88,-0.03:99
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chr20 1254103 rs34019978 C T 206.90 PASS AB=0.33;AC=1;AF=0.50;AN=2;DB;DP=14;Dels=0.00;HRun=0;HaplotypeScore=0.49;MQ=60.00;MQ0=0;OQ=276.47;QD=18.43;SB=-142.60 GT:DP:GL:GQ 0/1:14:-35.15,-4.22,-16.76:99
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chr20 1254153 . G C 0.58 FDRtranche2.00to10.00 AB=0.65;AC=1;AF=0.50;AN=2;DP=23;Dels=0.00;HRun=1;HaplotypeScore=2.96;MQ=58.84;MQ0=0;OQ=94.48;QD=2.36;SB=38.16 GT:DP:GL:GQ 0/1:23:-19.67,-6.94,-81.78:99
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chr20 1254292 rs8123274 T C 542.05 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=29;Dels=0.00;HRun=0;HaplotypeScore=0.32;MQ=56.96;MQ0=0;OQ=276.88;QD=8.93;SB=-72.74 GT:DP:GL:GQ 0/1:29:-39.71,-8.74,-69.58:99
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chr20 1255888 rs6033448 C T 732.69 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.32;MQ0=0;OQ=2613.99;QD=38.44;SB=-1212.37 GT:DP:GL:GQ 1/1:66:-265.00,-19.88,-0.02:99
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chr20 1256706 rs4814135 T G 602.94 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=60.00;MQ0=0;OQ=1974.11;QD=34.04;SB=-724.04 GT:DP:GL:GQ 1/1:57:-201.02,-17.17,-0.02:99
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chr20 1258688 rs13044351 C T 534.80 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;HRun=0;HaplotypeScore=3.18;MQ=107.90;MQ0=0;OQ=3435.20;QD=38.17;SB=-1133.54 GT:DP:GL:GQ 1/1:86:-342.52,-25.91,-0.03:99
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chr20 1259267 rs6109485 T G 569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;HRun=1;HaplotypeScore=0.32;MQ=59.11;MQ0=0;OQ=1784.26;QD=34.31;SB=-729.07 GT:DP:GL:GQ 1/1:51:-182.03,-15.36,-0.02:99
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chr20 1259268 rs6109486 T C 653.60 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=0.32;MQ=59.09;MQ0=0;OQ=1768.74;QD=34.68;SB=-671.95 GT:DP:GL:GQ 1/1:50:-180.48,-15.07,-0.02:99
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chr20 1259981 rs6109490 C T 556.64 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=58.66;MQ0=0;OQ=1877.85;QD=36.11;SB=-738.63 GT:DP:GL:GQ 1/1:48:-191.39,-14.46,-0.02:99
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chr20 1260139 rs751524 T C 803.05 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2028.11;QD=34.37;SB=-788.11 GT:DP:GL:GQ 1/1:59:-206.42,-17.77,-0.02:99
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chr20 1260229 rs751525 A G 46.06 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;HRun=2;HaplotypeScore=4.10;MQ=91.52;MQ0=0;OQ=1224.76;QD=32.23;SB=-553.34 GT:DP:GL:GQ 1/1:36:-126.08,-10.85,-0.02:99
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chr20 1260559 rs751523 G A 598.40 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=2.14;MQ=59.34;MQ0=0;OQ=2459.88;QD=39.05;SB=-1248.68 GT:DP:GL:GQ 1/1:62:-249.59,-18.68,-0.02:99
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chr20 1260910 rs912111 A G 626.49 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.03;MQ0=1;OQ=1624.62;QD=29.54;SB=-820.93 GT:DP:GL:GQ 1/1:53:-166.10,-15.99,-0.06:99
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chr20 1261136 rs34341545 C G 575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=59.73;MQ0=0;OQ=2904.75;QD=41.50;SB=-1291.44 GT:DP:GL:GQ 1/1:67:-294.08,-20.19,-0.02:99
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chr20 1261389 rs6033460 A G 839.49 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.16;MQ0=0;OQ=2338.89;QD=34.40;SB=-1109.13 GT:DP:GL:GQ 1/1:65:-237.49,-19.58,-0.02:99
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chr20 1261762 rs3764712 A G 718.47 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;HRun=1;HaplotypeScore=0.33;MQ=60.00;MQ0=0;OQ=2703.84;QD=36.05;SB=-1330.23 GT:DP:GL:GQ 1/1:75:-273.99,-22.59,-0.02:99
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chr20 1261936 rs6041490 T C 818.62 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.22;MQ0=0;OQ=2747.16;QD=35.22;SB=-1360.55 GT:DP:GL:GQ 1/1:77:-278.32,-23.19,-0.02:99
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chr20 1262055 rs6041496 C G 423.85 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=3.29;MQ=59.33;MQ0=0;OQ=2961.33;QD=42.92;SB=-1486.39 GT:DP:GL:GQ 1/1:69:-299.74,-20.79,-0.02:99
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chr20 1262265 rs6041497 A G 764.67 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.67;MQ0=0;OQ=2173.06;QD=31.04;SB=-1095.11 GT:DP:GL:GQ 1/1:68:-220.95,-20.51,-0.06:99
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chr20 1263152 rs34994424 C T 619.53 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.13;MQ0=0;OQ=2092.24;QD=39.48;SB=-791.06 GT:DP:GL:GQ 1/1:53:-212.82,-15.97,-0.01:99
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chr20 1263992 rs6041502 A G 844.83 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.63;MQ0=0;OQ=2215.55;QD=35.17;SB=-1040.92 GT:DP:GL:GQ 1/1:63:-225.16,-18.98,-0.02:99
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chr20 1264043 rs6033470 C T 681.03 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.53;MQ0=0;OQ=1938.11;QD=39.55;SB=-965.29 GT:DP:GL:GQ 1/1:49:-197.41,-14.76,-0.01:99
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chr20 1264641 rs6041508 C T 683.46 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=57.72;MQ0=0;OQ=2465.66;QD=38.53;SB=-939.89 GT:DP:GL:GQ 1/1:63:-253.20,-21.79,-3.05:99
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chr20 1266214 rs6041524 G A 823.10 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=54.30;MQ0=1;OQ=2432.78;QD=38.01;SB=-1090.96 GT:DP:GL:GQ 1/1:61:-246.88,-18.38,-0.02:99
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chr20 1266261 rs4814138 T G 610.16 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=53.79;MQ0=0;OQ=1371.77;QD=27.44;SB=-506.87 GT:DP:GL:GQ 1/1:44:-140.80,-13.26,-0.04:99
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chr20 1267470 . G T 0.22 FDRtranche2.00to10.00+ AB=0.59;AC=1;AF=0.50;AN=2;DP=33;Dels=0.00;HRun=2;HaplotypeScore=8.02;MQ=59.09;MQ0=0;OQ=98.45;QD=2.14;SB=68.24 GT:DP:GL:GQ 0/1:33:-23.07,-9.94,-95.49:99
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chr20 1267996 rs6041540 T C 510.84 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.75;MQ0=0;OQ=2196.25;QD=29.28;SB=-373.37 GT:DP:GL:GQ 1/1:66:-223.25,-19.89,-0.04:99
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chr20 1268254 . G T 87.18 ABFilter;DPFilter;Indel AB=0.81;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=2;HaplotypeScore=22.53;MQ=58.80;MQ0=0;QD=1.18;SB=47.16 GT:DP:GL:GQ 0/1:56:-28.88,-16.88,-155.72:99
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chr20 1268257 rs6033491 G T 2525.29 Indel AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.01;HRun=10;HaplotypeScore=35.03;MQ=58.57;MQ0=0;QD=32.38;SB=-676.99 GT:DP:GL:GQ 1/1:74:-256.14,-21.99,-0.03:99
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chr20 1270244 rs6041558 C T 787.26 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2475.04;QD=39.92;SB=-1019.85 GT:DP:GL:GQ 1/1:61:-251.10,-18.37,-0.01:99
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chr20 1270594 rs6514318 C T 193.84 PASS AB=0.66;AC=1;AF=0.50;AN=2;DB;DP=31;Dels=0.00;HRun=0;HaplotypeScore=3.74;MQ=58.32;MQ0=0;OQ=402.35;QD=10.32;SB=-49.99 GT:DP:GL:GQ 0/1:31:-52.86,-9.34,-59.60:99
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chr20 1271192 rs6109526 T C 425.39 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;HRun=0;HaplotypeScore=0.87;MQ=59.10;MQ0=0;OQ=3683.84;QD=35.77;SB=-1802.10 GT:DP:GL:GQ 1/1:102:-367.38,-30.72,-0.03:99
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chr20 1271773 rs6041575 C A 470.16 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;HRun=1;HaplotypeScore=0.73;MQ=58.48;MQ0=0;OQ=1556.52;QD=33.84;SB=-585.20 GT:DP:GL:GQ 1/1:44:-159.25,-13.25,-0.01:99
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chr20 1271934 . T C 570.99 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.12;MQ0=0;OQ=2763.97;QD=34.99;SB=-1070.80 GT:DP:GL:GQ 1/1:79:-280.01,-23.80,-0.03:99
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chr20 1271935 rs6041577 T A 843.42 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.12;MQ0=0;OQ=2931.62;QD=37.11;SB=-1059.27 GT:DP:GL:GQ 1/1:78:-296.77,-23.49,-0.02:99
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chr20 1272992 . T C 256 PASS AB=0.67;AC=1;AF=0.50;AN=2;DP=87;Dels=0.00;HRun=0;HaplotypeScore=2.12;MQ=60.00;MQ0=0;OQ=741.70;QD=8.53;SB=-367.05 GT:DP:GL:GQ 0/1:87:-103.66,-26.20,-236.78:99
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chr20 1273687 rs6104959 T C 744.90 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2258.08;QD=30.11;SB=-811.30 GT:DP:GL:GQ 1/1:72:-229.46,-21.72,-0.07:99
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chr20 1273720 rs6041586 A G 743.39 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.70;MQ0=0;OQ=2343.03;QD=30.04;SB=-972.34 GT:DP:GL:GQ 1/1:74:-237.95,-22.32,-0.06:99
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chr20 1275231 . T C 465.22 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.52;MQ0=0;OQ=1222.48;QD=15.88;SB=-543.59 GT:DP:GL:GQ 0/1:77:-148.72,-23.19,-147.11:99
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chr20 1275838 rs6041599 A G 735 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.68;MQ0=0;OQ=1210.03;QD=16.58;SB=-615.90 GT:DP:GL:GQ 0/1:71:-145.67,-21.38,-126.11:99
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chr20 1276230 rs4577347 C T 667.84 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=3214.25;QD=40.69;SB=-1601.39 GT:DP:GL:GQ 1/1:79:-325.03,-23.79,-0.01:99
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chr20 1276370 rs2317646 T C 686.72 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.96;MQ=59.40;MQ0=0;OQ=966.62;QD=13.81;SB=-454.82 GT:DP:GL:GQ 0/1:69:-120.74,-20.79,-129.41:99
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chr20 1276470 rs2317647 A T 1.23 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=85;Dels=0.01;HRun=7;HaplotypeScore=8.82;MQ=59.09;MQ0=0;OQ=988.31;QD=11.36;SB=-413.38 GT:DP:GL:GQ 0/1:85:-127.42,-25.30,-179.28:99
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chr20 1276766 . C A 121.52 PASS AB=0.43;AC=1;AF=0.50;AN=2;DP=64;Dels=0.00;HRun=0;HaplotypeScore=5.83;MQ=59.46;MQ0=0;OQ=936.93;QD=13.58;SB=-340.98 GT:DP:GL:GQ 0/1:64:-116.26,-19.29,-103.44:99
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chr20 1277550 rs6134663 C T 534.01 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=87;Dels=0.00;HRun=0;HaplotypeScore=0.63;MQ=59.41;MQ0=0;OQ=1558.31;QD=17.71;SB=-798.82 GT:DP:GL:GQ 0/1:87:-185.32,-26.21,-148.56:99
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chr20 1278664 rs56256914 C T 565.85 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1194.90;QD=17.83;SB=-605.06 GT:DP:GL:GQ 0/1:67:-142.96,-20.19,-105.22:99
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chr20 1280204 rs1819200 C T 563.14 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2941.17;QD=40.85;SB=-1089.95 GT:DP:GL:GQ 1/1:72:-297.72,-21.69,-0.01:99
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chr20 1280254 rs1581751 C A 735.40 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2430.21;QD=36.82;SB=-1239.77 GT:DP:GL:GQ 1/1:65:-246.62,-19.57,-0.01:99
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chr20 1280882 . T C 264.01 Indel AB=0.52;AC=1;AF=0.50;AN=2;DP=17;Dels=0.00;HRun=2;HaplotypeScore=12.30;MQ=48.86;MQ0=0;QD=12.57;SB=-70.35 GT:DP:GL:GQ 0/1:17:-34.81,-5.12,-28.68:99
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chr20 1280884 . C T 268.76 Indel AB=0.57;AC=1;AF=0.50;AN=2;DP=17;Dels=0.00;HRun=2;HaplotypeScore=12.30;MQ=46.15;MQ0=0;QD=12.80;SB=-81.09 GT:DP:GL:GQ 0/1:17:-35.28,-5.12,-29.97:99
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chr20 1280923 . T C 26.76 DPFilter;Indel;LowQual AB=0.88;AC=1;AF=0.50;AN=2;DP=25;Dels=0.00;HRun=2;HaplotypeScore=10.23;MQ=50.49;MQ0=1;QD=0.76;SB=11.07 GT:DP:GL:GQ 0/1:25:-13.49,-7.53,-83.33:59.59
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chr20 1280925 . C T 39.59 DPFilter;Indel;LowQual AB=0.89;AC=1;AF=0.50;AN=2;DP=28;Dels=0.00;HRun=2;HaplotypeScore=10.39;MQ=52.44;MQ0=1;QD=1.04;SB=20.07 GT:DP:GL:GQ 0/1:28:-15.68,-8.44,-87.23:72.42
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chr20 1280953 . C T 24.52 DPFilter;LowQual AB=0.90;AC=1;AF=0.50;AN=2;DP=34;Dels=0.00;HRun=2;HaplotypeScore=8.95;MQ=58.95;MQ0=1;QD=0.63;SB=23.10 GT:DP:GL:GQ 0/1:34:-15.97,-10.24,-111.88:57.34
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chr20 1280957 rs62187536 C T 6.97 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=38;Dels=0.00;HRun=2;HaplotypeScore=13.13;MQ=59.57;MQ0=1;OQ=673.26;QD=16.42;SB=-285.30 GT:DP:GL:GQ 0/1:38:-82.06,-11.45,-65.44:99
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chr20 1281060 rs62187537 C T 33.65 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=7.91;MQ=59.05;MQ0=0;OQ=1096.89;QD=20.31;SB=-497.54 GT:DP:GL:GQ 0/1:50:-128.04,-15.07,-61.75:99
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chr20 1283791 rs6131396 G C 660.86 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=1.66;MQ=59.15;MQ0=1;OQ=1302.48;QD=20.04;SB=-578.16 GT:DP:GL:GQ 0/1:64:-152.82,-19.29,-120.56:99
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chr20 1283865 rs6131397 T C 645.78 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=58.97;MQ0=1;OQ=486.76;QD=9.36;SB=-216.22 GT:DP:GL:GQ 0/1:48:-66.42,-14.46,-116.51:99
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chr20 1285254 rs6033525 T C 723.98 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.74;MQ0=0;OQ=2564.43;QD=35.62;SB=-984.04 GT:DP:GL:GQ 1/1:71:-260.05,-21.39,-0.03:99
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chr20 1285879 rs6134692 C T 354.60 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=57.80;MQ0=0;OQ=1588.66;QD=36.95;SB=-370.48 GT:DP:GL:GQ 1/1:40:-162.47,-12.05,-0.02:99
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chr20 1285967 rs6134693 A T 657.08 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=1377.86;QD=18.13;SB=-670.36 GT:DP:GL:GQ 0/1:76:-163.96,-22.89,-118.56:99
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chr20 1286085 rs62187539 C T 240.76 PASS AB=0.40;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=58.45;MQ0=0;OQ=1191.72;QD=19.86;SB=-230.93 GT:DP:GL:GQ 0/1:55:-139.02,-16.57,-69.06:99
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chr20 1287715 rs6041690 G A 2232.24 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=46.48;MQ0=0;QD=32.83;SB=-1111.03 GT:DP:GL:GQ 1/1:58:-226.83,-17.48,-0.02:99
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chr20 1287720 rs6109592 T C 2007.79 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=2;HaplotypeScore=0.47;MQ=46.44;MQ0=0;QD=29.10;SB=-941.03 GT:DP:GL:GQ 1/1:59:-204.40,-17.78,-0.03:99
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chr20 1287724 rs6041691 T C 1755.21 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=47.08;MQ0=0;QD=25.81;SB=-800.69 GT:DP:GL:GQ 1/1:56:-179.15,-16.89,-0.05:99
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chr20 1287949 rs4813097 C T 524.19 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.87;MQ=48.93;MQ0=0;OQ=3024.01;QD=35.16;SB=-1180.33 GT:DP:GL:GQ 1/1:77:-306.01,-23.20,-0.03:99
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chr20 1287958 rs6134704 T G 297.62 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=2;HaplotypeScore=2.78;MQ=44.98;MQ0=0;OQ=1022.65;QD=12.03;SB=-495.81 GT:DP:GL:GQ 0/1:75:-128.14,-22.59,-140.82:99
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chr20 1287982 rs61392108 A G 525.19 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=1.92;MQ=39.96;MQ0=0;OQ=679.52;QD=9.31;SB=-284.56 GT:DP:GL:GQ 0/1:62:-89.93,-18.69,-134.00:99
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chr20 1287993 rs11905198 A T 121.52 DPFilter;SnpCluster AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=36;Dels=0.00;HRun=1;HaplotypeScore=0.86;MQ=38.04;MQ0=0;QD=1.69;SB=3.17 GT:DP:GL:GQ 0/1:36:-26.29,-10.85,-102.06:99
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chr20 1287996 rs4813099 G A 1334.91 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;HRun=1;HaplotypeScore=1.86;MQ=36.79;MQ0=0;QD=19.35;SB=-684.41 GT:DP:GL:GQ 1/1:34:-137.08,-10.24,-0.01:99
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chr20 1288003 rs6134705 T G 1080.86 SnpCluster AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;HRun=0;HaplotypeScore=2.18;MQ=34.25;MQ0=0;QD=15.44;SB=-490.03 GT:DP:GL:GQ 1/1:31:-111.68,-9.34,-0.01:93.27
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chr20 1288015 rs6131405 T C 261.09 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=34;Dels=0.00;HRun=0;HaplotypeScore=4.52;MQ=30.91;MQ0=4;OQ=795.12;QD=10.33;SB=-360.04 GT:DP:GL:GQ 0/1:34:-93.05,-10.26,-16.48:62.22
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chr20 1288163 rs6033539 G A 726.37 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.61;MQ0=0;OQ=2071.39;QD=35.11;SB=-901.23 GT:DP:GL:GQ 1/1:54:-210.74,-16.27,-0.02:99
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chr20 1288244 rs62187541 A G 462.59 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=88;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=55.51;MQ0=0;OQ=1356.13;QD=14.58;SB=-694.25 GT:DP:GL:GQ 0/1:88:-165.41,-26.51,-170.63:99
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chr20 1288390 rs6078807 G A 451.57 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=4.19;MQ=56.50;MQ0=0;OQ=1133.48;QD=16.92;SB=-544.56 GT:DP:GL:GQ 0/1:62:-135.32,-18.68,-91.23:99
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chr20 1288965 rs6078809 G C 418.14 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.38;MQ0=0;OQ=1575.73;QD=23.52;SB=-785.44 GT:DP:GL:GQ 0/1:67:-181.06,-20.20,-102.61:99
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chr20 1289197 rs6041703 C A 637.05 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=87;Dels=0.00;HRun=1;HaplotypeScore=0.87;MQ=59.79;MQ0=0;OQ=1425.06;QD=16.19;SB=-709.51 GT:DP:GL:GQ 0/1:87:-172.00,-26.21,-141.77:99
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chr20 1290026 rs912112 C T 703.75 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2821.37;QD=40.31;SB=-1250.05 GT:DP:GL:GQ 1/1:70:-285.73,-21.08,-0.01:99
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chr20 1290187 rs912113 T C 522.77 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=1;HaplotypeScore=2.53;MQ=59.25;MQ0=0;OQ=933.91;QD=11.53;SB=-430.90 GT:DP:GL:GQ 0/1:77:-119.87,-23.19,-179.25:99
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chr20 1290481 rs733232 C G 557.89 PASS AB=0.49;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=58.74;MQ0=0;OQ=1382.21;QD=18.68;SB=-628.01 GT:DP:GL:GQ 0/1:74:-163.80,-22.30,-160.62:99
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chr20 1290533 rs733233 C G 510.79 PASS AB=0.38;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.73;MQ=56.50;MQ0=0;OQ=1414.55;QD=23.19;SB=-657.47 GT:DP:GL:GQ 0/1:59:-162.52,-17.78,-90.45:99
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chr20 1290853 . C A 0 FDRtranche2.00to10.00+ AB=0.84;AC=1;AF=0.50;AN=2;DP=59;Dels=0.02;HRun=11;HaplotypeScore=5.24;MQ=53.32;MQ0=0;OQ=120.13;QD=1.94;SB=119.40 GT:DP:GL:GQ 0/1:59:-32.77,-17.47,-180.77:99
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chr20 1290865 rs912114 C A 0.05 FDRtranche2.00to10.00+ AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.04;HRun=11;HaplotypeScore=14.25;MQ=49.82;MQ0=0;OQ=2431.66;QD=31.58;SB=-1049.36 GT:DP:GL:GQ 1/1:74:-246.78,-21.39,-0.03:99
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chr20 1290872 . C A 0.13 FDRtranche2.00to10.00+ AB=0.62;AC=1;AF=0.50;AN=2;DP=52;Dels=0.00;HRun=6;HaplotypeScore=10.39;MQ=49.36;MQ0=0;OQ=550.36;QD=7.44;SB=-10.74 GT:DP:GL:GQ 0/1:52:-73.99,-15.67,-98.58:99
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chr20 1290879 . C A 0.07 FDRtranche2.00to10.00+ AB=0.70;AC=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=6;HaplotypeScore=19.48;MQ=49.17;MQ0=0;OQ=298.04;QD=4.26;SB=29.26 GT:DP:GL:GQ 0/1:51:-48.45,-15.36,-124.11:99
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chr20 1291658 rs912115 G A 672.48 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.68;MQ0=0;OQ=848.87;QD=14.64;SB=-361.13 GT:DP:GL:GQ 0/1:56:-105.05,-16.88,-93.44:99
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chr20 1291807 rs912116 C T 768.63 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=76;Dels=0.00;HRun=0;HaplotypeScore=1.44;MQ=60.00;MQ0=0;OQ=1020.04;QD=12.91;SB=-384.71 GT:DP:GL:GQ 0/1:76:-128.19,-22.90,-151.80:99
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chr20 1292374 rs6041715 G C 726.04 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=2516.03;QD=42.64;SB=-1145.04 GT:DP:GL:GQ 1/1:59:-255.21,-17.78,-0.02:99
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chr20 1292775 rs6041716 A T 399.92 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=91;Dels=0.00;HRun=2;HaplotypeScore=2.58;MQ=59.59;MQ0=0;OQ=1406.07;QD=15.28;SB=-673.36 GT:DP:GL:GQ 0/1:91:-171.30,-27.41,-171.48:99
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chr20 1292910 . G A 479.09 PASS AB=0.52;AC=1;AF=0.50;AN=2;DP=70;Dels=0.00;HRun=0;HaplotypeScore=1.21;MQ=58.97;MQ0=0;OQ=1033.04;QD=14.15;SB=-536.53 GT:DP:GL:GQ 0/1:70:-127.67,-21.09,-138.44:99
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chr20 1292929 rs6033551 C A 458.45 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=1;HaplotypeScore=1.87;MQ=59.15;MQ0=0;OQ=2391.63;QD=36.24;SB=-1170.36 GT:DP:GL:GQ 1/1:66:-242.77,-19.88,-0.02:99
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chr20 1293303 rs8121632 G C 389.41 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=3.47;MQ=59.38;MQ0=0;OQ=1167.16;QD=15.56;SB=-557.58 GT:DP:GL:GQ 0/1:73:-142.01,-22.01,-160.45:99
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chr20 1293368 rs6033552 T G 509.50 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=1;HaplotypeScore=0.33;MQ=59.68;MQ0=0;OQ=758.68;QD=12.64;SB=-204.81 GT:DP:GL:GQ 0/1:58:-96.62,-17.47,-113.34:99
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chr20 1294162 rs8117563 A G 463.29 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=63;Dels=0.00;HRun=2;HaplotypeScore=0.98;MQ=60.03;MQ0=0;OQ=844.95;QD=13.41;SB=-418.18 GT:DP:GL:GQ 0/1:63:-106.75,-18.97,-139.90:99
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chr20 1294236 rs6514337 T G 785.59 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=60.00;MQ0=0;OQ=989.46;QD=14.14;SB=-379.61 GT:DP:GL:GQ 0/1:68:-122.71,-20.48,-122.57:99
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chr20 1294381 rs6033554 T C 752.27 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=59.59;MQ0=0;OQ=766.45;QD=13.69;SB=-297.35 GT:DP:GL:GQ 0/1:56:-96.80,-16.87,-111.93:99
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chr20 1294854 rs62187542 A G 134.09 PASS AB=0.34;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=2;HaplotypeScore=1.00;MQ=59.74;MQ0=0;OQ=1477.02;QD=20.23;SB=-403.66 GT:DP:GL:GQ 0/1:71:-172.37,-21.39,-102.48:99
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chr20 1294995 rs62187543 C T 334.67 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=0;HaplotypeScore=4.64;MQ=59.01;MQ0=0;OQ=1075.93;QD=16.30;SB=-503.14 GT:DP:GL:GQ 0/1:64:-130.16,-19.29,-104.78:99
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chr20 1295165 rs62187544 T A 630.52 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1402.43;QD=17.75;SB=-537.39 GT:DP:GL:GQ 0/1:79:-167.32,-23.79,-131.12:99
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chr20 1295754 rs7274030 G A 591.76 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.66;MQ0=0;OQ=749.63;QD=16.30;SB=-347.49 GT:DP:GL:GQ 0/1:46:-92.11,-13.86,-75.81:99
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chr20 1295968 rs6041734 C T 19.34 PASS AB=0.62;AC=1;AF=0.50;AN=2;DB;DP=82;Dels=0.00;HRun=2;HaplotypeScore=16.37;MQ=57.76;MQ0=0;OQ=985.98;QD=11.74;SB=-431.75 GT:DP:GL:GQ 0/1:82:-126.58,-24.70,-177.87:99
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chr20 1295998 rs7274616 C G 745.76 PASS AB=0.65;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.98;MQ=58.37;MQ0=0;OQ=872.35;QD=11.63;SB=-398.91 GT:DP:GL:GQ 0/1:75:-113.11,-22.60,-211.26:99
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chr20 1296426 rs6514339 T G 712.96 PASS AB=0.46;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=1;HaplotypeScore=0.97;MQ=58.98;MQ0=0;OQ=1097.12;QD=16.13;SB=-429.76 GT:DP:GL:GQ 0/1:68:-133.48,-20.48,-112.88:99
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chr20 1296542 rs6033557 A G 734.46 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=79;Dels=0.00;HRun=0;HaplotypeScore=1.51;MQ=59.31;MQ0=0;OQ=969.57;QD=11.97;SB=-440.51 GT:DP:GL:GQ 0/1:79:-124.04,-23.80,-183.04:99
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chr20 1296688 rs55686498 G A 675.61 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.83;MQ=59.35;MQ0=0;OQ=838.31;QD=13.10;SB=-370.12 GT:DP:GL:GQ 0/1:62:-105.80,-18.69,-114.82:99
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chr20 1296700 rs55977660 T C 634.73 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.50;MQ=59.31;MQ0=0;OQ=742.49;QD=12.17;SB=-295.22 GT:DP:GL:GQ 0/1:59:-95.30,-17.77,-134.31:99
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chr20 1298709 rs8392 T C 708.66 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.08;MQ0=0;OQ=771.28;QD=11.69;SB=-408.28 GT:DP:GL:GQ 0/1:66:-100.30,-19.89,-140.31:99
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chr20 1300322 rs6041759 T C 46.71 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=52;Dels=0.00;HRun=5;HaplotypeScore=1.26;MQ=58.86;MQ0=0;OQ=692.68;QD=12.15;SB=-185.59 GT:DP:GL:GQ 0/1:52:-88.22,-15.67,-103.00:99
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chr20 1301311 rs6033572 G A 257.80 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=90;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1455.43;QD=16.17;SB=-703.91 GT:DP:GL:GQ 0/1:90:-175.94,-27.11,-170.02:99
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chr20 1302410 rs6041772 C T 708.78 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=58;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=59.60;MQ0=0;OQ=878.50;QD=15.15;SB=-277.14 GT:DP:GL:GQ 0/1:58:-108.61,-17.47,-106.82:99
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chr20 1302483 rs6041774 C T 661.44 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=56;Dels=0.00;HRun=0;HaplotypeScore=1.96;MQ=59.59;MQ0=0;OQ=828.63;QD=14.80;SB=-259.83 GT:DP:GL:GQ 0/1:56:-105.50,-19.35,-107.59:99
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chr20 1302760 . T G 146.64 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=78;Dels=0.00;HRun=3;HaplotypeScore=0.00;MQ=59.43;MQ0=0;OQ=1242.24;QD=15.34;SB=-556.40 GT:DP:GL:GQ 0/1:78:-151.00,-23.49,-131.30:99
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chr20 1303677 rs6033581 C T 245.04 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=3;HaplotypeScore=1.89;MQ=59.26;MQ0=0;OQ=742.25;QD=13.02;SB=-246.54 GT:DP:GL:GQ 0/1:53:-93.48,-15.97,-100.13:99
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chr20 1303701 rs6131424 G A 210.32 PASS AB=0.43;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=2;HaplotypeScore=0.49;MQ=59.35;MQ0=0;OQ=1206.35;QD=18.56;SB=-379.89 GT:DP:GL:GQ 0/1:64:-143.21,-19.29,-89.83:99
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chr20 1303774 rs62187549 G A 591.95 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=1;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=817.84;QD=13.63;SB=-423.73 GT:DP:GL:GQ 0/1:59:-102.84,-17.77,-124.63:99
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chr20 1304261 rs6074549 G C 253.26 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;HRun=1;HaplotypeScore=2.99;MQ=59.44;MQ0=0;OQ=3171.61;QD=42.29;SB=-1563.26 GT:DP:GL:GQ 1/1:73:-320.76,-21.99,-0.02:99
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chr20 1305852 rs1323135 G T 323.86 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=78;Dels=0.00;HRun=3;HaplotypeScore=2.74;MQ=60.00;MQ0=0;OQ=940.36;QD=11.75;SB=-440.47 GT:DP:GL:GQ 0/1:78:-120.81,-23.49,-159.12:99
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chr20 1306272 rs6041827 C T 452.95 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=65;Dels=0.00;HRun=2;HaplotypeScore=0.79;MQ=59.71;MQ0=0;OQ=855.76;QD=13.17;SB=-392.11 GT:DP:GL:GQ 0/1:65:-108.44,-19.58,-134.20:99
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chr20 1306517 rs41280324 C G 480.05 PASS AB=0.69;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.98;MQ=59.69;MQ0=0;OQ=722.24;QD=9.63;SB=-335.03 GT:DP:GL:GQ 0/1:72:-97.21,-21.70,-215.66:99
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chr20 1306751 rs60669872 C T 603.17 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=1.00;MQ=63.34;MQ0=0;OQ=1034.73;QD=15.44;SB=-284.72 GT:DP:GL:GQ 0/1:67:-126.94,-20.18,-131.48:99
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chr20 1307238 rs395071 G A 809.87 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=60.00;MQ0=0;OQ=2510.59;QD=39.23;SB=-1071.42 GT:DP:GL:GQ 1/1:62:-254.66,-18.68,-0.01:99
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chr20 1308252 rs6041846 T A 685.33 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=1;HaplotypeScore=1.47;MQ=59.70;MQ0=0;OQ=1031.99;QD=13.23;SB=-448.43 GT:DP:GL:GQ 0/1:77:-129.67,-23.19,-164.34:99
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chr20 1308478 rs4505594 C T 371.82 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=3.95;MQ=59.25;MQ0=0;OQ=1245.58;QD=20.09;SB=-630.68 GT:DP:GL:GQ 0/1:60:-145.91,-18.07,-85.26:99
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chr20 1309199 . A G 396.60 PASS AB=0.47;AC=1;AF=0.50;AN=2;DP=56;Dels=0.00;HRun=1;HaplotypeScore=0.92;MQ=60.00;MQ0=0;OQ=765.61;QD=13.43;SB=-305.20 GT:DP:GL:GQ 0/1:56:-96.72,-16.88,-111.62:99
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chr20 1310406 rs6041861 A G 748.79 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=0;HaplotypeScore=0.48;MQ=60.00;MQ0=0;OQ=983.23;QD=12.29;SB=-440.53 GT:DP:GL:GQ 0/1:80:-125.72,-24.11,-167.32:99
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chr20 1311034 rs7274574 G C 773.68 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=0;HaplotypeScore=0.58;MQ=59.27;MQ0=0;OQ=857.81;QD=15.05;SB=-379.98 GT:DP:GL:GQ 0/1:53:-105.04,-15.97,-122.30:99
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chr20 1311527 rs1884392 C A 229.42 PASS AB=0.42;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=4;HaplotypeScore=1.75;MQ=59.29;MQ0=0;OQ=928.20;QD=17.51;SB=-439.18 GT:DP:GL:GQ 0/1:53:-112.07,-15.97,-72.10:99
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chr20 1311724 rs2144547 T G 634.75 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=2.03;MQ=59.43;MQ0=0;OQ=1086.40;QD=14.88;SB=-532.77 GT:DP:GL:GQ 0/1:70:-133.00,-21.08,-124.93:99
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chr20 1312327 . T A 0 FDRtranche2.00to10.00+ AB=0.65;AC=1;AF=0.50;AN=2;DP=50;Dels=0.05;HRun=6;HaplotypeScore=71.57;MQ=85.41;MQ0=0;OQ=385.32;QD=6.64;SB=-83.70 GT:DP:GL:GQ 0/1:50:-56.28,-14.46,-117.25:99
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chr20 1312328 . T A 0 FDRtranche2.00to10.00+ AB=0.68;AC=1;AF=0.50;AN=2;DP=51;Dels=0.05;HRun=19;HaplotypeScore=16.43;MQ=90.95;MQ0=0;OQ=388.32;QD=6.58;SB=-83.70 GT:DP:GL:GQ 0/1:51:-56.88,-14.76,-120.35:99
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chr20 1312521 rs6041880 G A 264.59 PASS AB=0.60;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=1;HaplotypeScore=5.44;MQ=59.19;MQ0=0;OQ=531.76;QD=10.23;SB=-127.56 GT:DP:GL:GQ 0/1:46:-70.33,-13.87,-94.84:99
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chr20 1312598 rs6041884 A G 477.90 PASS AB=0.50;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=2;HaplotypeScore=2.68;MQ=55.45;MQ0=0;OQ=868.53;QD=14.01;SB=-436.30 GT:DP:GL:GQ 0/1:60:-108.21,-18.07,-128.05:99
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chr20 1313886 rs6041891 C T 613.03 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=1;HaplotypeScore=0.89;MQ=57.75;MQ0=0;OQ=735.83;QD=14.72;SB=-384.94 GT:DP:GL:GQ 0/1:48:-91.33,-14.46,-88.99:99
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chr20 1313896 rs6041892 T C 632.26 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=0;HaplotypeScore=1.40;MQ=57.37;MQ0=0;OQ=613.97;QD=11.81;SB=-290.16 GT:DP:GL:GQ 0/1:50:-79.75,-15.07,-98.68:99
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chr20 1313964 rs6131443 G A 219.53 PASS AB=0.59;AC=1;AF=0.50;AN=2;DB;DP=48;Dels=0.00;HRun=0;HaplotypeScore=4.88;MQ=56.78;MQ0=0;OQ=620.88;QD=11.94;SB=-158.21 GT:DP:GL:GQ 0/1:48:-79.83,-14.46,-95.38:99
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chr20 1314766 rs56295224 T A 324.03 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=53;Dels=0.00;HRun=3;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=774.53;QD=14.61;SB=-409.81 GT:DP:GL:GQ 0/1:53:-96.70,-15.96,-106.03:99
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chr20 1315375 rs6041909 G C 758 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=0.89;MQ=60.00;MQ0=0;OQ=994.73;QD=16.58;SB=-408.51 GT:DP:GL:GQ 0/1:59:-120.56,-17.80,-120.64:99
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chr20 1317198 rs1294689 C T 807.04 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.62;MQ0=0;OQ=1843.87;QD=37.63;SB=-903.69 GT:DP:GL:GQ 1/1:47:-187.99,-14.16,-0.02:99
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chr20 1317430 rs6514364 G A 445.71 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=3.77;MQ=100.51;MQ0=0;OQ=1108.50;QD=17.32;SB=-465.96 GT:DP:GL:GQ 0/1:64:-133.42,-19.29,-104.93:99
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chr20 1318820 rs376197 G C 0.04 FDRtranche2.00to10.00+ AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1380.24;QD=43.13;SB=-53.47 GT:DP:GL:GQ 1/1:31:-141.62,-9.34,-0.01:93.31
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chr20 1319335 rs62186862 C T 370.56 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=37;Dels=0.00;HRun=1;HaplotypeScore=0.32;MQ=59.51;MQ0=0;OQ=538.59;QD=14.17;SB=-109.94 GT:DP:GL:GQ 0/1:37:-68.29,-11.15,-69.26:99
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chr20 1319697 rs1294690 A G 569.29 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;HRun=1;HaplotypeScore=0.99;MQ=60.00;MQ0=0;OQ=1858.79;QD=34.42;SB=-757.94 GT:DP:GL:GQ 1/1:53:-189.49,-15.97,-0.02:99
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chr20 1319792 rs6041947 A G 229.41 PASS AB=0.55;AC=1;AF=0.50;AN=2;DB;DP=37;Dels=0.00;HRun=3;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=459.88;QD=11.50;SB=-212.24 GT:DP:GL:GQ 0/1:37:-60.42,-11.15,-76.69:99
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chr20 1320386 rs3795136 G A 371.04 PASS AB=0.56;AC=1;AF=0.50;AN=2;DB;DP=61;Dels=0.00;HRun=2;HaplotypeScore=1.62;MQ=120.11;MQ0=0;OQ=827.35;QD=13.34;SB=-425.78 GT:DP:GL:GQ 0/1:61:-104.39,-18.37,-124.61:99
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chr20 1322364 rs1998006 T C 627 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=50;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=613.76;QD=12.03;SB=-271.39 GT:DP:GL:GQ 0/1:50:-79.73,-15.07,-104.11:99
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chr20 1323577 rs6033645 T C 651.51 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=46;Dels=0.00;HRun=0;HaplotypeScore=0.92;MQ=59.60;MQ0=0;OQ=572.65;QD=12.18;SB=-310.26 GT:DP:GL:GQ 0/1:46:-74.41,-13.86,-91.69:99
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chr20 1324299 rs62186864 C A 567.73 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=1;HaplotypeScore=1.79;MQ=59.74;MQ0=0;OQ=1094.50;QD=15.42;SB=-550.61 GT:DP:GL:GQ 0/1:70:-133.82,-21.08,-120.86:99
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chr20 1324444 rs6041970 G A 311.90 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=80;Dels=0.00;HRun=2;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1714.81;QD=20.91;SB=-723.99 GT:DP:GL:GQ 0/1:80:-198.86,-24.10,-114.00:99
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chr20 1324611 rs6041971 G T 789.91 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=60.00;MQ0=0;OQ=1063.23;QD=13.99;SB=-426.94 GT:DP:GL:GQ 0/1:75:-132.19,-22.59,-139.35:99
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chr20 1327086 rs6041976 A C 574.50 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=71;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.02;MQ0=0;OQ=945.82;QD=13.32;SB=-406.71 GT:DP:GL:GQ 0/1:71:-119.25,-21.38,-139.33:99
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chr20 1327866 rs55872953 A G 599.53 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=75;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=60.00;MQ0=0;OQ=1422.82;QD=18.97;SB=-593.96 GT:DP:GL:GQ 0/1:75:-168.15,-22.59,-117.89:99
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chr20 1328843 rs56035174 C T 577.31 PASS AB=0.47;AC=1;AF=0.50;AN=2;DB;DP=72;Dels=0.00;HRun=1;HaplotypeScore=0.74;MQ=59.04;MQ0=1;OQ=1311.58;QD=17.26;SB=-668.70 GT:DP:GL:GQ 0/1:72:-156.13,-21.68,-125.28:99
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chr20 1329026 rs59681252 A T 638.59 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=68;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.83;MQ0=0;OQ=1206.21;QD=16.99;SB=-593.74 GT:DP:GL:GQ 0/1:68:-144.39,-20.48,-110.98:99
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chr20 1329196 rs6033660 T G 768.99 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=81;Dels=0.00;HRun=0;HaplotypeScore=0.95;MQ=70.66;MQ0=1;OQ=1044.10;QD=12.43;SB=-366.74 GT:DP:GL:GQ 0/1:81:-132.09,-24.40,-160.91:99
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chr20 1329564 rs2317648 G A 688.14 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=57.60;MQ0=0;OQ=2663.31;QD=39.75;SB=-741.02 GT:DP:GL:GQ 1/1:67:-269.93,-20.18,-0.02:99
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chr20 1329658 rs55775852 G T 1179.27 Indel AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=13;HaplotypeScore=21.28;MQ=54.94;MQ0=0;QD=14.21;SB=-484.90 GT:DP:GL:GQ 0/1:77:-144.41,-23.20,-127.04:99
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chr20 1329694 rs6042000 T C 427.82 PASS AB=0.57;AC=1;AF=0.50;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=2.80;MQ=62.71;MQ0=0;OQ=464.79;QD=9.49;SB=-211.35 GT:DP:GL:GQ 0/1:43:-62.73,-12.97,-89.44:99
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chr20 1329740 rs2092877 T C 566.04 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;HRun=0;HaplotypeScore=-0.06;MQ=65.30;MQ0=0;OQ=1700.32;QD=29.32;SB=-538.99 GT:DP:GL:GQ 1/1:52:-173.66,-15.68,-0.04:99
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chr20 1329858 rs2092878 G A 445.23 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=51.36;MQ0=0;OQ=1730.48;QD=38.46;SB=-861.64 GT:DP:GL:GQ 1/1:43:-176.64,-12.95,-0.01:99
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chr20 1329878 rs2092879 G A 644.82 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=47.72;MQ0=0;OQ=1782.00;QD=37.91;SB=-781.53 GT:DP:GL:GQ 1/1:45:-181.80,-13.56,-0.01:99
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chr20 1329939 rs2092880 T G 359.50 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;HRun=2;HaplotypeScore=0.16;MQ=52.33;MQ0=0;OQ=2231.06;QD=35.41;SB=-1045.12 GT:DP:GL:GQ 1/1:63:-226.71,-18.97,-0.02:99
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chr20 1330035 rs61275523 C T 687.52 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=70;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=58.00;MQ0=0;OQ=1101.57;QD=15.74;SB=-462.45 GT:DP:GL:GQ 0/1:70:-134.53,-21.09,-128.05:99
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chr20 1330746 rs6033664 C A 529.88 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=46.12;MQ0=0;OQ=2364.74;QD=34.27;SB=-1055.53 GT:DP:GL:GQ 1/1:66:-240.08,-19.88,-0.02:99
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chr20 1330825 rs6033666 T C 556.48 PASS AB=0.54;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=3.13;MQ=59.36;MQ0=0;OQ=807.83;QD=12.43;SB=-264.38 GT:DP:GL:GQ 0/1:62:-102.74,-18.68,-134.14:99
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chr20 1330965 rs6042009 G A 645.88 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=59;Dels=0.00;HRun=0;HaplotypeScore=1.96;MQ=57.67;MQ0=0;OQ=975.94;QD=16.00;SB=-488.01 GT:DP:GL:GQ 0/1:59:-118.65,-17.78,-100.17:99
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chr20 1331173 rs11087049 C T 487.83 PASS AB=0.48;AC=1;AF=0.50;AN=2;DB;DP=64;Dels=0.00;HRun=1;HaplotypeScore=3.29;MQ=59.65;MQ0=0;OQ=1122.44;QD=17.27;SB=-508.10 GT:DP:GL:GQ 0/1:64:-134.81,-19.28,-112.19:99
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chr20 1331276 rs4814222 G A 603.99 PASS AB=0.39;AC=1;AF=0.50;AN=2;DB;DP=60;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.69;MQ0=0;OQ=1193.30;QD=19.56;SB=-572.38 GT:DP:GL:GQ 0/1:60:-140.69,-18.08,-87.60:99
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chr20 1331325 rs4814223 T C 192.56 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;HRun=4;HaplotypeScore=0.73;MQ=59.76;MQ0=0;OQ=2595.71;QD=32.86;SB=-1315.22 GT:DP:GL:GQ 1/1:74:-263.19,-22.30,-0.04:99
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chr20 1331506 rs12626072 T C 147.28 PASS AB=0.53;AC=1;AF=0.50;AN=2;DB;DP=74;Dels=0.00;HRun=0;HaplotypeScore=7.01;MQ=59.63;MQ0=0;OQ=830.23;QD=10.51;SB=-428.88 GT:DP:GL:GQ 0/1:74:-108.61,-22.31,-158.23:99
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chr20 1331729 rs4239709 T A 747.47 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=92;Dels=0.00;HRun=0;HaplotypeScore=1.03;MQ=59.25;MQ0=0;OQ=1600.42;QD=17.21;SB=-658.36 GT:DP:GL:GQ 0/1:92:-191.04,-27.71,-154.21:99
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chr20 1331809 rs4814224 T C 655.24 PASS AB=0.51;AC=1;AF=0.50;AN=2;DB;DP=69;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=59.40;MQ0=0;OQ=1022.69;QD=14.61;SB=-496.66 GT:DP:GL:GQ 0/1:69:-126.34,-20.78,-142.53:99
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chr20 1331821 rs6134845 G T 687.81 PASS AB=0.52;AC=1;AF=0.50;AN=2;DB;DP=62;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=58.98;MQ0=0;OQ=948.10;QD=14.81;SB=-411.08 GT:DP:GL:GQ 0/1:62:-116.77,-18.67,-112.27:99
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chr20 1331965 rs6134846 A G 682.84 PASS AB=0.45;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=2.55;MQ=59.59;MQ0=0;OQ=855.69;QD=15.28;SB=-415.21 GT:DP:GL:GQ 0/1:55:-105.42,-16.57,-99.77:99
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chr20 1332215 rs11698028 G A 602 PASS AB=0.63;AC=1;AF=0.50;AN=2;DB;DP=55;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=58.86;MQ0=0;OQ=561.63;QD=9.85;SB=-154.06 GT:DP:GL:GQ 0/1:55:-76.02,-16.57,-127.99:99
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chr20 1332298 rs6042018 T C 634.95 PASS AB=0.64;AC=1;AF=0.50;AN=2;DB;DP=57;Dels=0.00;HRun=0;HaplotypeScore=0.67;MQ=59.60;MQ0=0;OQ=574.10;QD=9.90;SB=-148.87 GT:DP:GL:GQ 0/1:57:-77.86,-17.17,-144.72:99
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chr20 1332427 rs6033673 C G 600.94 PASS AB=0.58;AC=1;AF=0.50;AN=2;DB;DP=77;Dels=0.00;HRun=0;HaplotypeScore=3.19;MQ=58.87;MQ0=0;OQ=1165.39;QD=14.94;SB=-473.16 GT:DP:GL:GQ 0/1:77:-143.03,-23.21,-189.04:99
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