25 lines
3.0 KiB
Plaintext
25 lines
3.0 KiB
Plaintext
##fileformat=VCFv4.1
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##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
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##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
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##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
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##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
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##INFO=<ID=DP,Number=1,Type=Integer,Description="Filtered Depth">
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##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
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##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
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##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
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##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
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##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
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##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
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##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
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##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
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##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
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##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
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##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
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#CHROM POS ID REF ALT QUAL FILTER INFO
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20 1000177 . C T 345 PASS AC=43;AF=0.02053;AN=2094;BaseQRankSum=-0.234;DP=3748;DS;FS=5.678;HRun=2;HaplotypeScore=35.9850;InbreedingCoeff=0.0715;MQ=67.54;MQ0=0;MQRankSum=-0.549;QD=0.53;ReadPosRankSum=-13.245;set=EUR.admix
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20 1000177 . CA C 82.64 PASS AC=43;AF=0.02053;AN=2094;BaseQRankSum=-0.234;DP=3748;DS;FS=5.678;HRun=2;HaplotypeScore=35.9850;InbreedingCoeff=0.0715;MQ=67.54;MQ0=0;MQRankSum=-0.549;QD=0.53;ReadPosRankSum=-13.245;set=EUR.admix
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20 1000382 . C G 456 PASS AC=19;AF=0.00996;AN=1908;BaseQRankSum=3.153;DP=1249;FS=12.307;HRun=0;HaplotypeScore=25.9702;InbreedingCoeff=0.0716;MQ=49.54;MQ0=22;MQRankSum=-5.327;QD=2.71;ReadPosRankSum=-8.146;set=ASN.admix
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20 1000382 . CCAAT C 246.44 PASS AC=19;AF=0.00996;AN=1908;BaseQRankSum=3.153;DP=1249;FS=12.307;HRun=0;HaplotypeScore=25.9702;InbreedingCoeff=0.0716;MQ=49.54;MQ0=22;MQRankSum=-5.327;QD=2.71;ReadPosRankSum=-8.146;set=ASN.admix
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20 1000442 rs112800484 TTTCA T 28592.75 PASS AC=1034;AF=0.69583;AN=1486;BaseQRankSum=19.864;DB;DP=1304;FS=31.497;HRun=0;HaplotypeScore=17.6398;InbreedingCoeff=0.2728;MQ=46.55;MQ0=85;MQRankSum=-6.417;QD=30.65;ReadPosRankSum=-2.058;set=EUR.admix
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