gatk3的最后一个经典版本3.8

Roger Zurawicki 5672688a73 Optimized CoverageByRG and Added GCContent ... - CoverageByRG now uses a hashmap for its value instead of a list. It runs about 4 times faster. - Cleaned up some of the code - CoverageByRG now calculates GCContent Signed-off-by: Mauricio Carneiro <carneiro@broadinstitute.org>		2011-12-28 15:25:07 -05:00
public	GATKSAMRecord emptyRead static constructor	2011-12-27 17:01:17 -05:00
settings	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-12-22 10:49:52 -05:00
ivy.xml	Let this one slip through my commits.	2011-12-26 21:55:02 -05:00