gatk3的最后一个经典版本3.8

Mark DePristo 564fe36d22 VariantRecalibrator's VQSR.vcf now contains NEG/POS labels ... -- It's useful to know which sites have been used in the training of the model. The recal_file emitted by VR now contains VCF info field annotations labeling each site that was used in the positive or negative training models with POSITIVE_TRAINING_SITE and/or NEGATIVE_TRAINING_SITE -- Update MD5s, which all changed now that the recal file and the resulting applied vcfs all have these pos / neg labels		2013-04-16 09:09:47 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	VariantRecalibrator's VQSR.vcf now contains NEG/POS labels	2013-04-16 09:09:47 -04:00
public	Several improvements to ReadAdaptorTrimmer so that it can be incorporated into ancient DNA processing pipelines (for which it was developed):	2013-04-13 13:41:36 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00