kshakir 56433ebf6b Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects: ... - bsub command line is no longer fully printed out. - extraBsubArgs hack is now a callback function updateJobRun. Updated FullCallingPipelineTest to reflect latest changes to fullCallingPipeline.q. Added a pipeline that tests the UGv2 runtimes at different bam counts and memory limits. Updated VE packages that live in oneoffs to compile to oneoffs. Added a hack to replace the deprecated symbol environ in Mac OS X 10.5+ which is needed by LSF7 on Mac. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4816 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-10 04:36:06 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects:	2010-12-10 04:36:06 +00:00
test	Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects:	2010-12-10 04:36:06 +00:00