Mauricio Carneiro 56106d54ed Changing ReadUtils behavior to comply with GenomeLocParser ... Now the functions getRefCoordSoftUnclippedStart and getRefCoordSoftUnclippedEnd will return getUnclippedStart if the read is all contained within an insertion. Updated the contracts accordingly. This should give the same behavior as the GenomeLocParser now.		2011-09-19 14:00:00 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Changing ReadUtils behavior to comply with GenomeLocParser	2011-09-19 14:00:00 -04:00
test	Final intervals cleanup	2011-09-19 10:19:10 -04:00