gatk3的最后一个经典版本3.8

Mauricio Carneiro 56106d54ed Changing ReadUtils behavior to comply with GenomeLocParser ... Now the functions getRefCoordSoftUnclippedStart and getRefCoordSoftUnclippedEnd will return getUnclippedStart if the read is all contained within an insertion. Updated the contracts accordingly. This should give the same behavior as the GenomeLocParser now.		2011-09-19 14:00:00 -04:00
public	Changing ReadUtils behavior to comply with GenomeLocParser	2011-09-19 14:00:00 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fix nasty bug involving the build report generation when multiple test targets are specified on the same command line.	2011-09-09 12:13:10 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00