Mark DePristo 33ecec535d Turn off the LD merging code by default ... -- It's just too hard to interpret the called variation when we merge variants via LD. -- Can now be turned on with -mergeVariantsViaLD -- Update MD5s		2013-04-09 10:08:06 -04:00
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gatk/walkers	Turn off the LD merging code by default	2013-04-09 10:08:06 -04:00
utils	HaplotypeCaller no longer uses reads with poor likelihoods w.r.t. any haplotype	2013-04-08 12:47:49 -04:00