Mark DePristo 33ecec535d Turn off the LD merging code by default ... -- It's just too hard to interpret the called variation when we merge variants via LD. -- Can now be turned on with -mergeVariantsViaLD -- Update MD5s		2013-04-09 10:08:06 -04:00
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java	Turn off the LD merging code by default	2013-04-09 10:08:06 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00