ebanks 55a8306a0d Update the @RMD tags to look for VariantContext.class instead of ReferenceOrderedDatum.class. Since the test for rod type is broken this won't affect anything right now. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4084 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-23 17:49:37 +00:00
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alignment	Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting.	2010-08-22 14:27:05 +00:00
analyzecovariates	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
commandline	Add deprecated command-line arguments, and switched over UG to output to	2010-08-22 21:01:44 +00:00
gatk	Update the @RMD tags to look for VariantContext.class instead of ReferenceOrderedDatum.class. Since the test for rod type is broken this won't affect anything right now.	2010-08-23 17:49:37 +00:00
oneoffprojects	Update the @RMD tags to look for VariantContext.class instead of ReferenceOrderedDatum.class. Since the test for rod type is broken this won't affect anything right now.	2010-08-23 17:49:37 +00:00
playground	Update the @RMD tags to look for VariantContext.class instead of ReferenceOrderedDatum.class. Since the test for rod type is broken this won't affect anything right now.	2010-08-23 17:49:37 +00:00
queue	vcfwriter is in tribble now	2010-08-23 17:01:04 +00:00
utils	vcfwriter is in tribble now	2010-08-23 17:01:04 +00:00