hanna 555976d575 One more walker with formatting to fix. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2369 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-15 21:23:13 +00:00
..
alignment	Help system content for the alignment module.	2009-12-11 16:01:25 +00:00
analyzecovariates	Updated AnalyzeCovariates to extend org.broadinstitute.sting.utils.cmdLine.CommandLineProgram and use the standard argument parsing.	2009-12-11 21:57:18 +00:00
gatk	Fix for homopolymer bug: ref was lowercase, alt allele was uppercase, so alt != ref. Yuck.	2009-12-15 19:02:23 +00:00
oneoffprojects	Added - new tests (Hapmap was re-added)	2009-12-14 21:57:20 +00:00
playground	One more walker with formatting to fix.	2009-12-15 21:23:13 +00:00
utils	Bugfix for minBaseQuality to ignore deletion reads. LocusMismatch walker now allows us to skip every nths eligable site	2009-12-15 14:38:39 +00:00