Guillermo del Angel f31bf37a6f First step in better BQSR unit tests for covariates (not done yet): more test coverage in basic covariates, test logging several read groups/read lengths and more combinations simultaneously. ... Add basic Javadocs headers for PerReadAlleleLikehoodMap.		2013-02-03 15:31:30 -05:00
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genotyper	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
pairhmm	Move BaseUtils back to the GATK by request, along with associated utility methods	2013-01-30 13:09:44 -05:00
recalibration	First step in better BQSR unit tests for covariates (not done yet): more test coverage in basic covariates, test logging several read groups/read lengths and more combinations simultaneously.	2013-02-03 15:31:30 -05:00