ebanks 55013eff78 Re-revert back to point estimation for now. We need to do this right, just not yet. ... Also, it's safer to let colt do the log factorial calculations for us. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1503 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-02 15:33:18 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Re-revert back to point estimation for now. We need to do this right, just not yet.	2009-09-02 15:33:18 +00:00
test/org/broadinstitute/sting	Better organization of Genotype likelihood calculations. NewHotness is now just GenotypeLikelihoods. There are 1, 3, and empirical base error models available as subclasses, along with a simple way to make this (see the factory).	2009-08-30 19:16:30 +00:00