hanna a77ca2d36a Incorporating Guillermo's patch to eliminate compile-time dependency of (core) UG indel model ... on oneoffs. Thanks Guillermo! We'll polish the patch when you free up a bit. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5888 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-27 02:22:19 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Incorporating Guillermo's patch to eliminate compile-time dependency of (core) UG indel model	2011-05-27 02:22:19 +00:00
test	First of many baby steps to redo way in which we trigger events for indel calling and to eliminate extended events: get rid of SpanningDeletions annotation for indels. It's completely useless, and even more so once we no longer trigger at extended events (because we'll trigger by definition a base before a deletion starts, so deletions present in the current pileup are not informative).	2011-05-26 00:49:23 +00:00