hanna 21d1eba502 Cleaned division of responsibilities between arguments to map function. Reference has been changed ... from an array of bases to an object (ReferenceContext), and LocusContext has been renamed to reflect the fact that it contains contextual information only about the alignments, not the locus in general. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1376 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-04 21:01:37 +00:00
..
gatk	Cleaned division of responsibilities between arguments to map function. Reference has been changed	2009-08-04 21:01:37 +00:00
utils	Tests for downsampling related utilities in ListUtils class that didn't get checked in earlier	2009-07-31 00:09:35 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00