Eric Banks 574d5b467f Bug fix for indel HMM: protect against situation where long reads (e.g. Sanger) in a pileup can lead to a read starting after the haplotype end for a given haplotype.		2012-12-09 02:09:34 -05:00
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TraverseActiveRegionsTest.java	Bug fix for indel HMM: protect against situation where long reads (e.g. Sanger) in a pileup can lead to a read starting after the haplotype end for a given haplotype.	2012-12-09 02:09:34 -05:00
TraverseDuplicatesUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
TraverseReadsUnitTest.java	Retiring TraverseReads and TraverseLoci after testing confirms nano scheduler version in single threaded version is fine	2012-10-22 16:55:06 -04:00