kshakir 542d394e09 Cleaning up Queue debugging output. ... -l DEBUG with local programs now prints out the stdout/stderr of the programs as they are run. More documentation in the examples with a new even simpler CountReads example. Took out unused option to build Queue GATK extensions separately. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4025 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-13 15:54:08 +00:00
..
qscript	Cleaning up Queue debugging output.	2010-08-13 15:54:08 +00:00
src	Cleaning up Queue debugging output.	2010-08-13 15:54:08 +00:00
test/org/broadinstitute/sting/queue/util	Exposed CommandLineFunction defaults to the Queue.jar command line (see -help).	2010-08-11 21:58:26 +00:00