Mauricio Carneiro 36600fd8e9 added MQ of low MQ/BQ to consensus RMS ... Bases that were excluded for MQ and BQ filters are now contributing to the MQ RMS (but not to consensus base counts and variant/not variant region triggers).		2011-11-01 17:46:12 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	added MQ of low MQ/BQ to consensus RMS	2011-11-01 17:46:12 -04:00
test	Moving ReduceRead TAG to GATKSAMRecord	2011-11-01 17:12:09 -04:00