Mauricio Carneiro 36600fd8e9 added MQ of low MQ/BQ to consensus RMS ... Bases that were excluded for MQ and BQ filters are now contributing to the MQ RMS (but not to consensus base counts and variant/not variant region triggers).		2011-11-01 17:46:12 -04:00
..
R	Compacting pdfs when running under R 2.13+.	2011-10-27 14:51:56 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	added MQ of low MQ/BQ to consensus RMS	2011-11-01 17:46:12 -04:00
packages	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	No more R resources in the DPP	2011-10-28 16:57:01 -04:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00