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annotator
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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beagle
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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bqsr
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Replace uses of NestedHashMap with NestedIntegerArray.
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2013-02-27 14:03:39 -05:00 |
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compression/reducereads
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Clear ReduceReads name cache after each set of reads produced by ReduceReadsStash.
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2013-03-19 14:12:33 -04:00 |
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diagnostics
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walker to calculate per base coverage distribution
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2013-02-07 16:33:05 -05:00 |
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diffengine
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Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)
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2013-03-12 10:57:14 -04:00 |
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fasta
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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genotyper
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Fix to issue encountered when running HaplotypeCaller in GGA mode with data from other 1000G callers.
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2013-03-20 14:30:37 -04:00 |
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haplotypecaller
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Bug fix in assembly for edge case in which the extendPartialHaplotype function was filling in deletions in the middle of haplotypes.
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2013-03-15 14:20:25 -04:00 |
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indels
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Fixed IndelRealigner reference length bug (GSA-774)
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2013-02-19 16:00:36 -05:00 |
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phasing
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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validation
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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varianteval
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Move some VCF/VariantContext methods back to the GATK based on feedback
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2013-01-29 16:56:55 -05:00 |
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variantrecalibration
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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variantutils
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Added new walker to split MNPs into their allelic primitives (SNPs).
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2013-03-05 23:16:42 -05:00 |
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