gatk3的最后一个经典版本3.8

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Eric Banks 53a7d5cbae Fixing a bug in the GVCF writer. The writer was never resetting the pointer to the end of the last non-ref VariantContext that it saw. This was fine except when it jumped to a new contig - and a lower position on that contig - where it thought that it was still part of that previous non-ref VariantContext so wouldn't emit a reference block. Therefore, ref blocks were missing from the beginnings of all chromosomes (except chr1). Added unit test to cover this case.		2014-02-20 02:33:43 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fixing a bug in the GVCF writer.	2014-02-20 02:33:43 -05:00
public	Merge pull request #528 from broadinstitute/eb_fix_cat_variants_usage_message	2014-02-19 22:45:22 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Merge pull request #518 from broadinstitute/ks_skashin_gatkdocs_arguments	2014-02-14 13:57:19 -05:00

The Genome Analysis Toolkit