gatk3的最后一个经典版本3.8

Roger Zurawicki 538cdf9210 Created the FindCoveredIntervals ... Moved some stuff in the DiagnoseTargets walker to the more general ThresHolder class Minor tweaks FindCoveredIntervals supports Gathering FindCoveredIntervals outputs an interval list instead of GATKReport Signed-off-by: Mauricio Carneiro <carneiro@broadinstitute.org>		2012-06-13 11:15:25 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Created the FindCoveredIntervals	2012-06-13 11:15:25 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00