Karthik Gururaj ec54528605 Fixed error in Sandbox.java		2014-03-05 09:36:55 -08:00
..
.gitignore	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
LoadTimeInitializer.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
LoadTimeInitializer.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
Makefile	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
Sandbox.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
Sandbox.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
Sandbox.java	Fixed error in Sandbox.java	2014-03-05 09:36:55 -08:00
Sandbox_JNIHaplotypeDataHolderClass.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
Sandbox_JNIReadDataHolderClass.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
avx_function_instantiations.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
baseline.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
define-double.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
define-float.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
define-sse-double.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
define-sse-float.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
headers.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
jni_common.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
jnidebug.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
pairhmm-1-base.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
pairhmm-template-kernel.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
pairhmm-template-main.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
run.sh	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
shift_template.c	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
sse_function_instantiations.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
template.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
utils.cc	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
utils.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
vector_defs.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
vector_function_prototypes.h	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00