Eric Banks a0219acfaa Collapse the PerReadAlleleLikelihoodMap classes into 1 now that Lite is gone		2013-01-07 14:55:21 -05:00
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src/org/broadinstitute/sting	Collapse the PerReadAlleleLikelihoodMap classes into 1 now that Lite is gone	2013-01-07 14:55:21 -05:00
test/org/broadinstitute/sting	Bug fix in the HC's allele mapping for multi-allelic events. Using the allele alone as a key isn't sufficient because alleles change when the reference allele changes during VariantContextUtils.simpleMerge for multi-allelic events.	2013-01-07 11:05:44 -05:00