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533c283783
gatk-3.8
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public
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java
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Eric Banks
533c283783
Deprecating AlignmentContext.getExtendedEventPileup(). At this point the only walkers left with any relaiance on extended events are Guillermo's pooled code (he'll update soon) and the Pileup walker. David, I'll leave that last one for you (it should be easy). We can now officially rip the extended event code from the engine.
2012-03-30 10:37:14 -04:00
..
config
Reorganized the codebase beneath top-level public and private directories,
2011-06-28 06:55:19 -04:00
src
Deprecating AlignmentContext.getExtendedEventPileup(). At this point the only walkers left with any relaiance on extended events are Guillermo's pooled code (he'll update soon) and the Pileup walker. David, I'll leave that last one for you (it should be easy). We can now officially rip the extended event code from the engine.
2012-03-30 10:37:14 -04:00
test
Removing dependence on extended events from the RealignerTargetCreator. Did some minor refactoring while I was in there.
2012-03-30 10:33:30 -04:00