gatk-3.8/public/java
Eric Banks 533c283783 Deprecating AlignmentContext.getExtendedEventPileup(). At this point the only walkers left with any relaiance on extended events are Guillermo's pooled code (he'll update soon) and the Pileup walker. David, I'll leave that last one for you (it should be easy). We can now officially rip the extended event code from the engine. 2012-03-30 10:37:14 -04:00
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config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Deprecating AlignmentContext.getExtendedEventPileup(). At this point the only walkers left with any relaiance on extended events are Guillermo's pooled code (he'll update soon) and the Pileup walker. David, I'll leave that last one for you (it should be easy). We can now officially rip the extended event code from the engine. 2012-03-30 10:37:14 -04:00
test Removing dependence on extended events from the RealignerTargetCreator. Did some minor refactoring while I was in there. 2012-03-30 10:33:30 -04:00