Mark DePristo 1200848bbf Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers ... -- Deleted ReadMetaDataTracker -- Added function to ReadShard to give us the span from the left most position of the reads in the shard to the right most, which is needed for the new view		2012-08-30 10:15:10 -04:00
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walkers	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
DummyProtectedClass.java	Total rewrite of the isGATKLite() functionality with help of Khalid/David. PluginManager was not working for us.	2012-07-17 15:11:03 -04:00