gatk3的最后一个经典版本3.8

Mark DePristo 53376b9423 Part III of GSA-462: Consistent RODBinding access across Ref and Read trackers ... -- shardSpan is only calculated when there some ROD is live in the GATK. No sense in paying the cost per read when you don't need it -- Update contract to allow null span or unmapped span (good catch unittests!)		2012-08-30 10:15:10 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
public	Part III of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00