52ef4a3e26
Returns true iff VC is an non-complex indel where every allele represents an expansion or contraction of a series of identical bases in the reference. The logic of this function is pretty simple. Take all of the non-null alleles in VC. For each insertion allele of n bases, check if that allele matches the next n reference bases. For each deletion allele of n bases, check if this matches the reference bases at n - 2 n, as it must necessarily match the first n bases. If this test returns true for all alleles you are a tandem repeat, otherwise you are not. Note that in this context n is the base differences between the ref and alt alleles |
||
|---|---|---|
| .. | ||
| R | ||
| c | ||
| chainFiles | ||
| doc | ||
| java | ||
| keys | ||
| packages | ||
| perl | ||
| scala | ||
| testdata | ||