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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/walkers
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Mark DePristo 526b524c3c CombineVariants with new RodBinding. Bugfix 
-- CombineVariants now uses the new RodBinding syntax, -V / --variants.  Passed all integration tests on first run
-- Exposed gapping bug in the List<RodBinding<T>> system now fixed.  ParserEngine now has a addRodBinding() that is called by RodBindingArgumentTypeDescriptor when it encounters each RodBinding.  This allows the system to work with collection types that are recursively parsed by the system.
 		2011-08-07 20:16:51 -04:00
..
annotator Replacing hardcoded dbsnp129 with BaseTest variable 2011-08-03 22:15:22 -04:00
beagle --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
coverage Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
diffengine GATKReport v0.2: 2011-08-03 00:24:47 -04:00
fasta Replacing hardcoded dbsnp129 with BaseTest variable 2011-08-03 22:15:22 -04:00
filters Need to rename the integration test argument -mask to -maskName 2011-08-07 13:32:26 -04:00
genotyper Replacing hardcoded dbsnp129 with BaseTest variable 2011-08-03 22:15:22 -04:00
indels Replacing hardcoded dbsnp129 with BaseTest variable 2011-08-03 22:15:22 -04:00
phasing Continuing progress towards RodBinding 1.0 2011-08-03 17:19:28 -04:00
qc Continuing progress towards RodBinding 1.0 2011-08-03 17:19:28 -04:00
recalibration Merge branch 'master' into rodRefactor 2011-08-04 12:48:56 -04:00
validation Continuing progress towards RodBinding 1.0 2011-08-03 17:19:28 -04:00
varianteval VariantEval Integration Test parameterized for new novelty stratification 2011-08-04 18:08:47 -04:00
variantrecalibration Walker test system refactoring. All MD5DB related functions are now in MD5DB.java. 2011-07-18 10:46:01 -04:00
variantutils CombineVariants with new RodBinding. Bugfix 2011-08-07 20:16:51 -04:00
BAQIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ClipReadsWalkersIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PileupWalkerIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsWalkerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00